Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0493 ATGCGTGGATTGCGAAAATCGAAGAGAGTTTCATGGCCTTCCGAATTAGATCTTTGTCAGGTTAGGTTATTCTTATCTGAGGAATCTCCTTCACAAGTTGGGTTGAATTCTCAAGATCACCTCCAAGAAAAGATATCATCCTTGTTGCCTCAAGGAGAAGCTGGTTCTGATGATATTTTACCTCCTGGATTTGAGGGAACTCATACTTCAAGTCAGTTTGACATTAAGCTGTCCGACATACCAGTTATTAGCTGGATTAAACCACCTAAGATCGTGCTAGATCTCACATGGCAAGTGGTGGCTGGAGAAGAAAGCAAAGAGATATTTGATCAACATCAGAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGAATATCTTCCATTCCTCCAAATCCTATTTCAGTGGATGTTGACGATTCCCATTACATTGATGGTCATATTGTCGTGATCCCAATTACGCCTGTTGAAGACGGGGATGTTGGAGCGGATACATTATCTCCTGGTATATTGGATGGTTCAAACACTGTTACGACTATGTCGATGGTGTCTGATGTAGCTGCTGCATCTGTTGCTTTAACTAGCTTAGTGAAGAGCAGTGAACATGGTAATTTGATTGATCCTGAATTACTCAATAATATTCTCAACAATCCGGAAGTGATCGAGAAGTTGGTTAGAAATTATAATGTTCAAAATGCACAGTATGCACAAAACACCGGATCATCATCAAATGTTTTTTCACATCCTCCTAATCCCTTTAATCAAGTTGAGACCACTACATCCTCATCAAATGCCTTTTCATCCACTTCTTCCTATACCCACACAACCGGAGGTCAGATGGCGCCAACTATGTCTACTCAATGGCATCGTAGGCCTGAAATCAGTTCAGCTATTGCTGCTACTCCTGTTGAGGTCCCTTCAACAAAAGATGTAAACTACTATAAGAGCTTGATTCAGCAACATGGAGGAGATAAACAAGAAGCACTTCCATACTCCTCCAGTAATCGCCAGAACCAGCAACCATTATCAAACTATGATACAGTACACAATTTTAGAGCAAAAGGATCAAAACCAAAAATATCGAAGCCTTGTATCTTTTTTAATAGTTCCAGAGGATGTCGGAATGGAGCTAACTGTACCTTTCAGCATGATGCATCATTTCAGCCCCAACAAGGTAATCCCTCGTCAGGGATGCATAGTTCAAAGAGAATGAAAATGGATAATGAGATCAGCAGTTAA 1239 0.4068 MRGLRKSKRVSWPSELDLCQVRLFLSEESPSQVGLNSQDHLQEKISSLLPQGEAGSDDILPPGFEGTHTSSQFDIKLSDIPVISWIKPPKIVLDLTWQVVAGEESKEIFDQHQREMRVLEAIYPRISSIPPNPISVDVDDSHYIDGHIVVIPITPVEDGDVGADTLSPGILDGSNTVTTMSMVSDVAAASVALTSLVKSSEHGNLIDPELLNNILNNPEVIEKLVRNYNVQNAQYAQNTGSSSNVFSHPPNPFNQVETTTSSSNAFSSTSSYTHTTGGQMAPTMSTQWHRRPEISSAIAATPVEVPSTKDVNYYKSLIQQHGGDKQEALPYSSSNRQNQQPLSNYDTVHNFRAKGSKPKISKPCIFFNSSRGCRNGANCTFQHDASFQPQQGNPSSGMHSSKRMKMDNEISS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0493 412 MobiDBLite consensus disorder prediction 324 343 - -
Mtr1g0493 412 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 407 - -
Mtr1g0493 412 MobiDBLite consensus disorder prediction 384 401 - -
Mtr1g0493 412 MobiDBLite consensus disorder prediction 384 412 - -
Mtr1g0493 412 MobiDBLite consensus disorder prediction 326 343 - -
Mtr1g0493 412 ProSiteProfiles Zinc finger C3H1-type profile. 358 386 IPR000571 GO:0046872
Mtr1g0493 412 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 407 - -
Mtr1g0493 412 SUPERFAMILY CCCH zinc finger 363 385 IPR036855 GO:0046872
Mtr1g0493 412 MobiDBLite consensus disorder prediction 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0493 Mtr-Chr1 5743235 5748545 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr1g0493 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0493 - - cam:101501814 595.504