Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0455 ATGGGAACAGAGAGTTACACATACATGGGACGAAGTTTCAACGAATTCTCCATCAACGATGATTCAACTTCCTCCGCTTTCAGCGACTGCAACAGTGACAGATCCGGCGAATTCGCCACCACTTCTTCTACCTCCCGACGGCTCTTCCTCGCCTGCGCTTCCGAAAATTCCGATGACCTCATCCGTCAACTTGTCTCCGATCTTCACTCCGATTCAATCGAAGAGCAGAAACAAGCCGCTATGGAAATTCGATTACTCGCCAAGAATAAACCTGAAAATCGAATCAAAATCGCTAAAGCTGGCGCAATTAAACCGTTAATTTCGTTAGTTACTTCACAGGACCTGCAACTTCAAGAATACGGTGTTACCGCGATTTTGAATCTCTCTTTGTGCGACGAAAATAAAGAACTAATAGCTTCTTCCGGAGCTATTAAACCGTTAGTTAGAGCGTTAAATTCAGGAACATCAACAGCTAAAGAGAACGCGGCTTGTGCGCTCCTTCGTCTATCTCAGGTGGAAGAGAACAAGGCGGCGATTGGAAGATCCGGTGCAATTCCGTTATTGGTGAATCTTCTAGGAAGTGGAGGAATACGCGGGAAGAAGGACGCGTCTACGGCGCTGTATACTCTGTGTTCTGTGAAGGAGAATAAGATGAGAGCGGTGAAAGCGGGGATAATGAAGGTGTTGGTTGAGTTGATGGCGGATTTTGAATCGAATATGGTGGATAAATCGGCTTATGTTTTGAGTGTATTGGTATCGGTGCCGGAGGCGAAGGTTGCGTTGGTGGAGGAAGGTGGTGTGCCGGTGTTGGTTGAGATTGTGGAGGTTGGATCGCAGAGACAGAAGGAAATTGCGGCGGTTATTCTGTTACAGATTTGTGAAGATAGCGTGGCGGTTCGATCCATGGTGGCTCGTGAGGGTGCCATTCCTCCTTTGGTTGCTTTGACGCAGTCCGGCACCAATCGCGCCAAACAAAAGGCTGAGAAATTAATTGAGCTTCTGAGGCAACCAAGATCTACACGTATATCAGAATGA 1035 0.4725 MGTESYTYMGRSFNEFSINDDSTSSAFSDCNSDRSGEFATTSSTSRRLFLACASENSDDLIRQLVSDLHSDSIEEQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLVTSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKAAIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCSVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVLSVLVSVPEAKVALVEEGGVPVLVEIVEVGSQRQKEIAAVILLQICEDSVAVRSMVAREGAIPPLVALTQSGTNRAKQKAEKLIELLRQPRSTRISE* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0455 344 Gene3D - 213 343 IPR011989 -
Mtr1g0455 344 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Mtr1g0455 344 PANTHER U BOX DOMAIN-CONTAINING 5 341 - -
Mtr1g0455 344 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Mtr1g0455 344 SUPERFAMILY ARM repeat 57 332 IPR016024 -
Mtr1g0455 344 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 341 - -
Mtr1g0455 344 SMART arm_5 213 253 IPR000225 GO:0005515
Mtr1g0455 344 SMART arm_5 90 130 IPR000225 GO:0005515
Mtr1g0455 344 SMART arm_5 254 294 IPR000225 GO:0005515
Mtr1g0455 344 SMART arm_5 131 171 IPR000225 GO:0005515
Mtr1g0455 344 SMART arm_5 172 212 IPR000225 GO:0005515
Mtr1g0455 344 Gene3D - 37 200 IPR011989 -
Mtr1g0455 344 Pfam Armadillo/beta-catenin-like repeat 174 212 IPR000225 GO:0005515
Mtr1g0455 344 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Mtr1g0455 344 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0455 Mtr-Chr1 5272198 5274642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0455 47 338 U-box Gene Family AT2G23140 49.329 2.88e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0455 - - gmx:100797550 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0455 1 5272198 5274642 Mtr1g0455 1 5272198 5274642 ECH
Mtr1g0455 1 5272198 5274642 Mtr3g3714 3 50924411 50929295 PCT