Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0439 ATGGCTGAACAGACTGAGAAGGCTTTTTTGAAGCAAAATAAAGTGTTTTTATGCTCGAAGATATCTGGGAAGGGGAAGAGACCTGGAAAGGGTGGCAATCGTTTTCATAAAACTGTTGGCCTTGGTTTTAAGACTCCTAGGGAAGCCATTGAAGGAACCTATATTGACAAGAAGTGTCCCTTCACTGGTAATGTCTCAATCCGAGGTCGTATCATATCTGGTACTTGCCATAGTGCTAAGATGAATAAGACCATTGTTGTTAGGAGGAATTATCTTCATTTCATTAAGAAATATCAGAGGTATGAGAAGCGCCATTCTAATATTCCTGCACACGTATCACCTTGTTTCCGAGTGAAGGAAGGGGATCATGTTATTATTGGCCAATGCAGGCCACTTTCGAAGACAGTGAGGTTCAATGTATTGAAAGTCATCCCAGCTGGATCTTCTAGTGGTGCCGGTGCCAAGAAGGCATTTACAGGAGTCTGA 486 0.4239 MAEQTEKAFLKQNKVFLCSKISGKGKRPGKGGNRFHKTVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIISGTCHSAKMNKTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGAKKAFTGV* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0439 161 Coils Coil 161 161 - -
Mtr1g0439 161 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mtr1g0439 161 TIGRFAM uS17_arch: ribosomal protein uS17 54 143 IPR028333 -
Mtr1g0439 161 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Mtr1g0439 161 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Mtr1g0439 161 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Mtr1g0439 161 Gene3D - 1 158 - -
Mtr1g0439 161 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mtr1g0439 161 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mtr1g0439 161 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mtr1g0439 161 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 161 - -
Mtr1g0439 161 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 161 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0439 Mtr-Chr1 5099303 5101404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0439 1 161 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 87.578 2.20e-93 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0439 K02949 - osa:9271697 289.271