Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0438 ATGCTTTCGTATGAGATGGATAATCCATTGATGGGTTTTGAAACATCTTTCAAAGGTTGTTTTTCTAGTGTCTTAGACACTGAAAAAATGGATCTCAAGTTGATAATTGAAGAGCTTGATTCAATTGATGATGTTCCTTATGTGTTTATATGTCCAATCTCACTTGAACCAATGCAAGAGCCTGTTACACTATGCACAGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGTTATGGGATGATTCAATCACTCCCAACAACACTCTCAAACAATTGATCTTTACTTGGTTCTCACACAAGTACTTAGGAATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGAGTTTTGGAAACATTGGAGACACTCAAGAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGAAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACATTGTTGGAAAATGGTGGGGTTGGTTTGGTTTGTTCTTTGTTAGGTTCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGTATCATTGTGAATTTGGATTTGAGTTTAGAATTGAAGAGAAAACATCTTATGCATCCAGGTAAAGTTTCATTGGTTGTTGATATCATGAATGAGGGAACTATTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAATTGGAAGGAAATGAAACTATGGTTGAGATTGTTTCAAGTTTGAGTCTTTTGGTTGGATTATTGAGATTAGTGAGAGATAAGAAACATCCAAATGGAGTCTTAATTGGTCTCACATTGCTTAAGAAAGTATTATGTTGTCATGAATCAATTAGAAGTTCTATGATAAGCATAGGTGCAATTCCTCAATTGATTGAGATTTTACCAAATTTGAACAATGAGTGTTTGGAGATAGCACTTTATATATTAGAGGTATTGTCAACACTTGAAGAAGGGAAATTGGCATTGAAAGAATGTCCAAACATTATACCTAATGTGGTAAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTTGCATTGTCAATATTGTGGGCTATTTACAAACTTGCACCTGAAGAATGTGCTTCAAAGGCTGTGGAAGCTGGATTGGCTTCAAAATTATTGCTTGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGAAATCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTATTTTTATTTCTAAGTGTATGCTTACTACAACAATACAATGA 1305 0.3425 MLSYEMDNPLMGFETSFKGCFSSVLDTEKMDLKLIIEELDSIDDVPYVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLIFTWFSHKYLGMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTLLENGGVGLVCSLLGSFTSHVVGCEAIGIIVNLDLSLELKRKHLMHPGKVSLVVDIMNEGTIETKMNCAKLIEMLLMELEGNETMVEIVSSLSLLVGLLRLVRDKKHPNGVLIGLTLLKKVLCCHESIRSSMISIGAIPQLIEILPNLNNECLEIALYILEVLSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQKSSEFLKMCSVNYSTSIFISKCMLTTTIQ* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0438 434 SUPERFAMILY ARM repeat 144 419 IPR016024 -
Mtr1g0438 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 122 IPR013083 -
Mtr1g0438 434 ProSiteProfiles U-box domain profile. 44 118 IPR003613 GO:0004842|GO:0016567
Mtr1g0438 434 CDD RING-Ubox_PUB 49 91 IPR045210 -
Mtr1g0438 434 Gene3D - 123 430 IPR011989 -
Mtr1g0438 434 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 433 - -
Mtr1g0438 434 Pfam U-box domain 45 115 IPR003613 GO:0004842|GO:0016567
Mtr1g0438 434 SMART Ubox_2 48 111 IPR003613 GO:0004842|GO:0016567
Mtr1g0438 434 SUPERFAMILY RING/U-box 41 113 - -
Mtr1g0438 434 PANTHER WDSAM1 PROTEIN 25 433 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0438 Mtr-Chr1 5096589 5098303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0438 28 434 U-box Gene Family AT3G49810 61.916 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0438 - - gmx:100803878 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0438 1 5096589 5098303 Mtr1g0438 1 5096589 5098303 ECH