Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0426 ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCATCTTCAGAAATGGATATCAGTTCTGTGTCAAATATGGCTAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCATCATTTCATGGCTTCTTCTGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGTGGTTCTTCAATGGTTTCCCATAATGAGTTTGCTAATGCTAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGAATGAGTAGCACTTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCATCACAGCATTATAATCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCATGAGGATGGAGCTACAGGATCTGCACCTGGTAGTGGAAGTAGAAGAAAAAGAGGACTTGATCAAAATTCTACTTTCAGTCCAAACAAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCAAGGAAGATTTCTGATGGTTCAAAAGAAAATGATAAGAAACCAAAAGTTGAGCAATCAGGGAAGCAAGCTAAAGATAACTCTCCCAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACAAACAGTCACAGTCTTGCAGAAAGGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGTTGCTTCAAGAACTTGTTCCGGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCGGAACTGAACTTTGATGTAGAGCGGCTCTTATCCAAAGATTCACGCTTAGGACTTGGAATTGGTGGATTTGTTCCTGGTATGAGCTCTTCTCATCCATTCCCAAACGCAAGTTTCCAGGGTAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGGAATGGGATATGATCCCAATACAGCACTTGACAATTTGGGATCCAATGGGAGGTTGAAACCAGAGTTATAG 1272 0.4096 MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMAKTSSDVVNHHQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGATGSAPGSGSRRKRGLDQNSTFSPNKNAEGDGVKDSPRKISDGSKENDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDSRLGLGIGGFVPGMSSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYGMGYDPNTALDNLGSNGRLKPEL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0426 423 SMART finulus 272 322 IPR011598 GO:0046983
Mtr1g0426 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983
Mtr1g0426 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 334 IPR036638 GO:0046983
Mtr1g0426 423 MobiDBLite consensus disorder prediction 196 210 - -
Mtr1g0426 423 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 14 423 IPR024097 GO:0006355
Mtr1g0426 423 Pfam Helix-loop-helix DNA-binding domain 269 317 IPR011598 GO:0046983
Mtr1g0426 423 MobiDBLite consensus disorder prediction 214 240 - -
Mtr1g0426 423 MobiDBLite consensus disorder prediction 180 254 - -
Mtr1g0426 423 CDD bHLH_AtBPE_like 256 341 - -
Mtr1g0426 423 Gene3D - 263 337 IPR036638 GO:0046983
Mtr1g0426 423 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0426 Mtr-Chr1 4867203 4871716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0426 1 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.570 1.85e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g0426 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0426 - - gmx:100794464 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0426 1 4867203 4871716 Mtr1g0426 1 4867203 4871716 ECH