Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0417 ATGAATGTTGATGATACCTCCAACACATGGTTTCAACTTGATCTTGATCTAGGTCTTGCCCTTCATGATCATTTTGATGACCATAGGAAGAGAGAAAGCAAGAAGAAAAGAGTGGAGAATCCATCAAAATGCATTAAGGCTTATCAAATGCTTACATTAGGACCATCAAAGGAAGAGAGTGAAGAAAATACTAAAATTCAACATTCAACATCAAAGACTGAATCTTGTGATCAAAATTTACCTACTCAATTTACTTCTCCAAGCATAGAGTCTTCATTTTCAAATTCCACTAGCATCAAGAAGGAGAGTGGAGAGGAATTTGAGGTAGAGATAGAAAAGGTGCCAATTACAAGGATAGGAAATTTTGATAAAGATTGTAACCCAAGGAAGAAACTTAGGCTCACAAAAGAACAATCAGAAGTTTTGGAGGAAAACTTCAGAGAGCATTCTACTCTTAATCCGAAGCAAAAGCAAGCATTAGCAAATAAGCTGAATCTGCAGGCTAGACAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGAACAAAACTGAAACAAACGGAATCTGATTGTGAGGTACTGAAGAAGTGTTGCGAATCTCTAACAGAGGAGAACAAGAAGTTGCAAAAGGAGCTACAAGAACTAAAGTCAATGCAAACAGTGGCAGCTGCATCCTTTTATATGAAGATTCCAGCAGCAACACTTACCATCTGCCCTTCATGTGAGACAATTTGTGGTGGCAACAACAATGGCTCCTTACCCTCGACAACATTGCTTATTGGCTCAAAGACTCATCATCATTTCCATAAAAATAATAAAAATGATGATAATTATCAATTTCCCCATTCATCATCTGCAGCATGTTAA 867 0.376 MNVDDTSNTWFQLDLDLGLALHDHFDDHRKRESKKKRVENPSKCIKAYQMLTLGPSKEESEENTKIQHSTSKTESCDQNLPTQFTSPSIESSFSNSTSIKKESGEEFEVEIEKVPITRIGNFDKDCNPRKKLRLTKEQSEVLEENFREHSTLNPKQKQALANKLNLQARQVEVWFQNRRARTKLKQTESDCEVLKKCCESLTEENKKLQKELQELKSMQTVAAASFYMKIPAATLTICPSCETICGGNNNGSLPSTTLLIGSKTHHHFHKNNKNDDNYQFPHSSSAAC* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0417 288 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Mtr1g0417 288 SUPERFAMILY Homeodomain-like 126 193 IPR009057 -
Mtr1g0417 288 MobiDBLite consensus disorder prediction 53 99 - -
Mtr1g0417 288 Gene3D - 123 192 - -
Mtr1g0417 288 PANTHER - 9 286 - -
Mtr1g0417 288 SMART HOX_1 127 189 IPR001356 GO:0003677
Mtr1g0417 288 MobiDBLite consensus disorder prediction 69 99 - -
Mtr1g0417 288 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Mtr1g0417 288 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 9 286 - -
Mtr1g0417 288 Coils Coil 184 221 - -
Mtr1g0417 288 CDD homeodomain 128 186 IPR001356 GO:0003677
Mtr1g0417 288 Pfam Homeobox associated leucine zipper 185 218 IPR003106 GO:0006355|GO:0043565
Mtr1g0417 288 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Mtr1g0417 288 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0417 Mtr-Chr1 4725551 4727966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0417 129 244 Homeobox Transcription Factor Family AT4G37790 73.276 1.39e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr1g0417 Homeodomain 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0417 K09338 - gmx:100797650 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0417 1 4725551 4727966 Mtr1g0417 1 4725551 4727966 ECH