Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0404 ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAGAATGTCATGATATTTGAAGCAAGCAAGGTCCAAAATGAGACTAAGAGACTTTGCTCTGTTTACTCTAAACAAGGTACTAAAGGTCTCAACCAAGATGCTGCCTCTCTTCACCAGGATTATGGGATGGAAAATGGAGCATTTTGTGGTGTTTATGATGGACATGGAAAGAATGGACATATAGTAAGCAAAATAGTAAACAATACTTTACCTTCTCTCATATTGAGCCAAAAGAATGCTCTTGAGGAGATTCATACAACAAAAAATGGTGTTGACAACAAACAAAACAAATTTTCAAACAACTATCTAAGATGGAAAGAAGCTATTCTTGGAGCTTTCAATGTAATGGATGAGGAGGTGAAGAAACAAGAGAATCTAGATTGTTCTTGTAGTGGAACCACTGCTGTAGTTGTCATAAGACAGGGTGAAGGTCTTGTCATAGTTAACCTTGGTGACTCAAGAGCAATATTAGGAACAATCCAAGATGAAAAACTCAAAGCCATTCAATTAACCACTGATTTGAAGCCTGGTTTGCCTTGCGAAGCAAAGAGAATAAGGAGTTGCAACGGTTGTGTTTATGCGTTAAAGGAAGAACCACATGTCCAACGAGTATGGTTGCCCAACGAGAACTACCCTGGCCTAGCCATGTCTCGAGCTTTCGGAGATTTCATACTCAAAGACCATGGTGTTATTGCTACACCAGATATTTGGTATCACCGTTTAACATCAAGTGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAAGAGGTTGCATCAATTGTGTGGATGGTAGAAAGTGAAGAGGAAGCTGCAAGGGCAGTGGTGGAAGCAGCCACAGCTGCATGGGCAAAGAAGTTTCCTTCCTCTAGGGTAGATGATTGCACCGTGGTTTGCCATTTCCTGCAGAAGAAACCACAAAACTTGGAGTATATGGATAGTGGAAAATTAGGTTAA 1035 0.4048 MGICISVASSEIHGIPQVHDENVMIFEASKVQNETKRLCSVYSKQGTKGLNQDAASLHQDYGMENGAFCGVYDGHGKNGHIVSKIVNNTLPSLILSQKNALEEIHTTKNGVDNKQNKFSNNYLRWKEAILGAFNVMDEEVKKQENLDCSCSGTTAVVVIRQGEGLVIVNLGDSRAILGTIQDEKLKAIQLTTDLKPGLPCEAKRIRSCNGCVYALKEEPHVQRVWLPNENYPGLAMSRAFGDFILKDHGVIATPDIWYHRLTSSDQFIVLASDGVWDVLSNEEVASIVWMVESEEEAARAVVEAATAAWAKKFPSSRVDDCTVVCHFLQKKPQNLEYMDSGKLG* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0404 344 SMART PP2C_4 28 326 IPR001932 -
Mtr1g0404 344 CDD PP2Cc 37 289 IPR001932 -
Mtr1g0404 344 Pfam Protein phosphatase 2C 61 307 IPR001932 -
Mtr1g0404 344 PANTHER ALPHABET, ISOFORM E-RELATED 1 333 - -
Mtr1g0404 344 Gene3D - 19 331 IPR036457 -
Mtr1g0404 344 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 333 - -
Mtr1g0404 344 SUPERFAMILY PP2C-like 32 329 IPR036457 -
Mtr1g0404 344 ProSiteProfiles PPM-type phosphatase domain profile. 38 328 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0404 Mtr-Chr1 4534897 4539246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0404 1 333 PP2C-type Phosphatase Gene Family AT5G26010 53.529 3.68e-106 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0404 - - aip:107605550 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0404 1 4534897 4539246 Mtr1g0404 1 4534897 4539246 ECH