Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0399 ATGGACAAAGATTCATCAACTTGTTTTCAAATTCCTCAGGAATATGAATGTGAGCCAAATTTTGACGATGAATTAAAGCCTAAGATTGGACAAGTATTTGATACATTAGATGAAGGTAAAAAATTTTATGAAAAATACGCACTCTCTGTCGGATTTAGTGTGCGTTCAGCATCATCGACTATAGATAAAAAAGGCGTGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGGCAAAGAAGAAGGATGATAAGGAGGAAAGTGAATCTACTGTCAAGGCTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGGTTTCAAATGGGTAGGGGAAGGTAAGTACGAGATAGCTCGATTTCATGAAAGCCATACCCATCCACTTGCTTCACCTATGAAGAGACCGTTTCTAAGGACTGCAAGGAAGGTTAATCCATTTCACAAAAGCTTATTACATGCATGTAGTAGAGCAAATATTGGACCTTCAAAAGCTTTCCACTTATTAAAAGAACAGTGTGGGGGTTATGAAAATGTTGGATGCACGCAGAGAGATCTTCAAAACTATTCCAGAGATTTAAAGTCTTTGAATAAAGATTCTGATGCACATGTTTTGATAGATTACTTTAGAAGAAAGCAAGAAGTTAATCCATCCTTTTATTATGCATATGAGGTAGGTGAAGAAGGCCGGCTGAAGCATGTTTTCTGGGCAGATGGTATTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACATATGAAACAAATATGTATCATTTGATTTTTGCACCTTTCACCGGGATAAACCATCATCGACAATCTATTACGTTCGGAGTAGGACTTATAACAAATGAGAAAAGTGATTCATTTGTATGGTTGTTTGAAAAGTTTTTGGAAGCAATGGGTGGACATAAGCCAACTCTTATAATAACCGATCAAGATCCTTCCATGAAAGTGGCTATAGAAAAGATTTTTGATACTTCTACTCATAGATTGTGCATGTGGCATATCATGAAAAAAGTTTCTGAAAAAGTAGGTGTGTCCATGAATGATGATGATGAGTTCAACAAAAGTTTCAAGTCATGTGTTTGGGGTTCAGAGACACCAAATGAGTTTGAAGAGACTTGGGCATTTTTGATGACAAGGTTCGAGTTAGAAAAGAATAAGTGGTTGTTACATATGTTTGAAATTCGAAGGATGTGGATCCCAGCATACTTCAAAGACACTTTTATGGCTGGGATATTGAGAACAACATCAAGATCAGAAAGTGAGAATTCTTTTTATGGTAATTTCCTGAATCCTAATGTTAACTTGGTTGAATTTTGGATGAGGTTTGATTCAGCAATAGAAGCGCAACGACAGAAGGAGTTACTGGCTGATAATAACTCTATTCATTCTAAACCAAAACTAAAGTTGGAACGTGGTATAGAGAGGCATGCAAGAGATGTGTATACTCGTGAGAACTTTTATATATTTCAACATGAATTATGGATTGCATGCGTGGATTGTGGGATTGAAAATAAGAAAGATGGAGATGGGATGGAAATATTCCATATATATGATAATAGTGAGACCAATGGTAAACTTCGAGAAGTGGTGTATAACTTGTCCGATCACAATGCAAATTGCTCATGCAAAATGTTTCAGGCTGAAGGAATACCTTGTAGACACATACTTTGTGTTTTAAAGGGAAAAAAATTCAATGAAATACCAAGTAAGCACATTGTGAATAGGTGGACTAAGTTTGCAAATAGAACGCCTATTTTTGACATAGCTGACAATGTTTTGGAGGAAGATAGCAAACTAATTTCTGATGTGTGGAGTCACTTACATAGCTGTGTGGAGAAGGCTGGCAAAGATAAGGGAAAATTGCTTCTGTTGTTAAATGGGGCTGTTAACATGGAAAAACAATTGGACGAGTTTGAAGGGAGTTCTAAGAGAAACAGGACAGATGATTTGATTATTGGGTCCAATATTCCTGAGGAAGTAGAAATCCTTCCACCAAATTTTGCAAAGACTAAAGGTAGTGGGAAAAGAATCAAAGGTGGCAAAGAGAAGGCTATTGAACAACAACAAAAAAAGGCAAGACTTTGTAGGTTATGCGGTGAGTATGTGCATCATGACAGCCGCAATTGTCCCCAAAGATCATCTCCATAA 2187 0.3672 MDKDSSTCFQIPQEYECEPNFDDELKPKIGQVFDTLDEGKKFYEKYALSVGFSVRSASSTIDKKGVKRWKYFVCSKEGYLAKKKDDKEESESTVKARRRRALTREGCNANVGFKWVGEGKYEIARFHESHTHPLASPMKRPFLRTARKVNPFHKSLLHACSRANIGPSKAFHLLKEQCGGYENVGCTQRDLQNYSRDLKSLNKDSDAHVLIDYFRRKQEVNPSFYYAYEVGEEGRLKHVFWADGICRKNYSLFGDVVSFDTTYETNMYHLIFAPFTGINHHRQSITFGVGLITNEKSDSFVWLFEKFLEAMGGHKPTLIITDQDPSMKVAIEKIFDTSTHRLCMWHIMKKVSEKVGVSMNDDDEFNKSFKSCVWGSETPNEFEETWAFLMTRFELEKNKWLLHMFEIRRMWIPAYFKDTFMAGILRTTSRSESENSFYGNFLNPNVNLVEFWMRFDSAIEAQRQKELLADNNSIHSKPKLKLERGIERHARDVYTRENFYIFQHELWIACVDCGIENKKDGDGMEIFHIYDNSETNGKLREVVYNLSDHNANCSCKMFQAEGIPCRHILCVLKGKKFNEIPSKHIVNRWTKFANRTPIFDIADNVLEEDSKLISDVWSHLHSCVEKAGKDKGKLLLLLNGAVNMEKQLDEFEGSSKRNRTDDLIIGSNIPEEVEILPPNFAKTKGSGKRIKGGKEKAIEQQQKKARLCRLCGEYVHHDSRNCPQRSSP* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0399 728 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 194 612 IPR031052 GO:0006355
Mtr1g0399 728 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 154 IPR031052 GO:0006355
Mtr1g0399 728 Pfam SWIM zinc finger 551 571 IPR007527 GO:0008270
Mtr1g0399 728 Pfam FAR1 DNA-binding domain 41 135 IPR004330 -
Mtr1g0399 728 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 17 154 - -
Mtr1g0399 728 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 194 612 - -
Mtr1g0399 728 ProSiteProfiles Zinc finger SWIM-type profile. 540 576 IPR007527 GO:0008270
Mtr1g0399 728 SMART 26again6 551 578 IPR006564 GO:0008270
Mtr1g0399 728 Pfam MULE transposase domain 256 350 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0399 Mtr-Chr1 4495533 4498956 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g0399 FAR1 2.6e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0399 - - soe:110798711 767.689