Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0396 ATGGAGAATGATGTGTACACTGCTCAAATGAACATGGAAGATATCACACAACATCTAACACAAAAGCCACTCATTCATTACTATTCATTTGACCTTAACAACCAAAACAACATCATAAATGGAATTCCAATACTTTCTGGTGGAGAACAAGATCAACATGTTGATGGTAGTTTCATGAATCAAGTTACCATAGCTGATAATTCATTTGTTACATCACAACAAGGAAGGACTATTGTGGAAAATCCCTCAAATCTCATTGTTAATAACAATGACTTTTCGGTTCCGGCTAGAATCGGTCTTCAAGAAAATTTAGAAGCAATAGTTCCATACATATTCAATAATTGGCATGATACTTCAAACTCAAACCCTTTGTGTGCAACTTTTGGTGATAATAATAGCTATGTTAACAAGTTTTTGAAAGCTCAAGAGAGTAATGTTGGAACCGAATTCATGTCATATTCGCCGATAGGGAACATTGATCCAAATGGATGGCAATCATCAAATGTTGCTAACTTAACGAATCTCGCTTATAGTTCCTCGAATTGTAGCAATGAGCTTTCACTAAGTCTTGCAACATCTCCAACTTCAGTTCAATGCTCAGAGATTAGTTGTTCTGACTTAACTCATAGCATGAATGGAACAAGATCAGGTTTGGAACAAGCCTCATGTAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTCAAGTTTTCGCCCGCAATATTAGGATCAAGATACCTTGCTGTAATTCAGGAAATACTTGTTCAAATTGCAACATTTTCATTTGAAAATCTTGATGAGATAAACTATTCCGGTTCTGGTGTTAGAGGCCGAGGAAATAAATCAACTTCGTCAAACACAACCAAGCGAAGGATAGGAATAAATCGCGACGAGAGTCCTATGTCAGAAGCTTATGCTGATTCTTCATTGCAAAGGCATGCTGTTGAATCAAAGCAATCTCAACTCTTGATGCTTCTACAGATGGTGGACAGTCAATATAGTCAATGTTTGGATGAGATTCACACTGTCGTATCTGCATTTCATGCTGCTACTGAGCTCGATCCACAAATACACGCGCACTTTGCTGTCAAAACGGTTTCTCGACTATATAAGGACTTGAGAGAGAGGATTAGCAAACATATTCTTTCCATGGGATCAAATTTTAACAGTTCATGGTCAGAAGAGGATAAGGAATTATCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTTCAACAGTTGAAAAGGAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTTTCCGTTCTACGTGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGTCAGGTATCAAACTGGTTTATTAATGCGCGTGTTCGGCTATGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAAATGTTTGATATGAATTGA 1575 0.3746 MENDVYTAQMNMEDITQHLTQKPLIHYYSFDLNNQNNIINGIPILSGGEQDQHVDGSFMNQVTIADNSFVTSQQGRTIVENPSNLIVNNNDFSVPARIGLQENLEAIVPYIFNNWHDTSNSNPLCATFGDNNSYVNKFLKAQESNVGTEFMSYSPIGNIDPNGWQSSNVANLTNLAYSSSNCSNELSLSLATSPTSVQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQEILVQIATFSFENLDEINYSGSGVRGRGNKSTSSNTTKRRIGINRDESPMSEAYADSSLQRHAVESKQSQLLMLLQMVDSQYSQCLDEIHTVVSAFHAATELDPQIHAHFAVKTVSRLYKDLRERISKHILSMGSNFNSSWSEEDKELSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQMFDMN* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0396 524 MobiDBLite consensus disorder prediction 276 299 - -
Mtr1g0396 524 MobiDBLite consensus disorder prediction 501 524 - -
Mtr1g0396 524 Gene3D - 419 500 - -
Mtr1g0396 524 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 521 - -
Mtr1g0396 524 SMART HOX_1 425 489 IPR001356 GO:0003677
Mtr1g0396 524 CDD homeodomain 425 485 IPR001356 GO:0003677
Mtr1g0396 524 PANTHER HOMEOBOX PROTEIN ATH1 15 521 - -
Mtr1g0396 524 Pfam Homeobox KN domain 442 481 IPR008422 GO:0003677|GO:0006355
Mtr1g0396 524 ProSiteProfiles 'Homeobox' domain profile. 422 485 IPR001356 GO:0003677
Mtr1g0396 524 SUPERFAMILY Homeodomain-like 427 494 IPR009057 -
Mtr1g0396 524 SMART prehox3 238 382 IPR006563 -
Mtr1g0396 524 MobiDBLite consensus disorder prediction 278 293 - -
Mtr1g0396 524 Pfam Associated with HOX 244 381 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0396 Mtr-Chr1 4470736 4474514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0396 184 498 Homeobox Transcription Factor Family AT4G32980 59.062 2.96e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr1g0396 POX 2.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0396 - - gmx:100812648 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0396 1 4470736 4474514 Mtr1g0396 1 4470736 4474514 ECH