Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0378 ATGACTCCTGTTTCTCTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCTTCAATATTTCTCCTGTTAATCAGGACACTCCTACCTTCTTTAACTTACTTGGAGACTTTGGAGAAAACTATGATCATCATCATCATCAGGATCATAAGCTGGCATTTCATCATGATGGATCATCATCAAGCAATCATCAACAACAACTCTATAATTCATCAAGTGAGTCAGTTATGGTGGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAGAACAGTCACGGGTCTGAGAAATGGATATCTTCAAAGATGAGGTTGATGAATAAAATGATCAACACAACTGCTACTGTTGCCACAACTCCAATAATGAGACCAAACAACAGTATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAGTCCTAGTAATTTCGGTACTAGTCCAAGAAATCAAAATGTAAGGTACAGCCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCTCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCAAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCAGAAGCTGCAAATGGTTTGGCTACATCTCCTAAAACTAAAGTGCTTAAGATAAAAAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACAAGTACCTCTTCAACTTCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAACTTGAATCTTTTGCATTAGATTATGATTATGATGAAGCAGCTACGGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTACTGA 918 0.4041 MTPVSLNPPGPNSLLQGQNQFFNISPVNQDTPTFFNLLGDFGENYDHHHHQDHKLAFHHDGSSSSNHQQQLYNSSSESVMVDSSSARDTNLSSSLELEDSSKKNSHGSEKWISSKMRLMNKMINTTATVATTPIMRPNNSIAATTDKAIKTTTPMMSPSNFGTSPRNQNVRYSQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSSTSTTSAGSSSQDVKKLESFALDYDYDEAATAARLLVDISSGVTY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0378 305 MobiDBLite consensus disorder prediction 55 110 - -
Mtr1g0378 305 MobiDBLite consensus disorder prediction 237 270 - -
Mtr1g0378 305 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 30 303 - -
Mtr1g0378 305 CDD ZnF_GATA 188 246 IPR000679 GO:0006355|GO:0043565
Mtr1g0378 305 ProSitePatterns GATA-type zinc finger domain. 189 214 IPR000679 GO:0006355|GO:0043565
Mtr1g0378 305 MobiDBLite consensus disorder prediction 61 98 - -
Mtr1g0378 305 Pfam GATA zinc finger 189 222 IPR000679 GO:0006355|GO:0043565
Mtr1g0378 305 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 30 303 - -
Mtr1g0378 305 Gene3D - 184 266 IPR013088 GO:0006355|GO:0008270
Mtr1g0378 305 SMART GATA_3 183 234 IPR000679 GO:0006355|GO:0043565
Mtr1g0378 305 MobiDBLite consensus disorder prediction 250 270 - -
Mtr1g0378 305 MobiDBLite consensus disorder prediction 152 184 - -
Mtr1g0378 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 223 - -
Mtr1g0378 305 ProSiteProfiles GATA-type zinc finger domain profile. 183 219 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0378 Mtr-Chr1 4303400 4306014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0378 108 220 C2C2-Gata Transcription Factor Family AT5G56860 41.221 7.32e-19 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr1g0378 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0378 - - mtr:MTR_1g016170 587.415