Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0368 ATGATGAAAGGTTTGTCGGTAGAAGAAAATATGTCAAATTTGACATCTGCTTCAAGTGAAATAAGTGCTTCTTCAGCAACCAAGAATGGAAAAGCTTCAACAAATCTGGAACCACAAACCAAAAGGAAGAGAAATCTTCCTGGTCACCCAGACCCTGAGGCACAAGTGCTAGCCTTGAGTCCCCAAACTCTCTTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAGAGAGGACATAATTTGCCATGGAAGCTAAAGAAAAGAAACGTCAATGAAATCATAAGAAAGAAAGTATATGTTTGTCCAGAGCCAACATGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACCTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGTTCTAAACGATATGCAGTTCAGTCGGATTGGAAAGCTCATTCCAAAATTTGTGGCACTAAAGAGTATAAGTGTGACTGTGGAACCCTCTTCTCAAGAAGGGACAGTTTCATCACTCACAGAGCCTTCTGTGACGTTTTATCACAGGAGAGTGCATCAATTTCAGCAGTGAACCCTCTATTCTCTTCTCACTCCCAATTTCATCAAAGCCATGGTTTTCAACCACTATCACTAAAAAAGGAACAAGACTTCAATTTAAGACCAGAAATTCCATTATGGTTACTCCCAACCCATTTGAACCATTTTCAAAACCCTAACCCTACAACTTTGTTTCCTAATAATTCTTTCAACTCCAACAATATAACCACTGCTTCTCCTCACATGTCTGCCACTGCTTTGCTGCAAAAAGCATCACAAATAGGTGTAACGACAGTGAGTAAAACAGAACCTTGTAGACCCCACTTAATGCAAACTCACGTGCCTTCAGGAATGGTTATGCCTTCACGTGAAGAAATAGGAACCACTGGTTTTTCTCATTGTTTGGCTTCTTATGGGAATAAAGCTGCAATAACTTCTGATTGCTTTGAAGAATCTTCTTCTCTTTTGCATGATGTGATGTATGGTAGTGAGAGTTCACATTCACAATTTGAAGCTGTTACTGCTGCTATGAGCATGAGGGGAATGTTTGATACACAAAGAGATAATAATAACTTTGAGGAACAATATTCCCATTTTGGTAAAAGCAACATTATAAAGAATGGTGGTGCCAATGATGATGAGATGACAAGAGATTTTTTGAGTCTTGGTGCATTTTCTCAAAGAGACTTGTTCAATATATCTGGAATTGATGGCCCTTTGAGTTTGCATGGTAAGCAAAATCAAATTCAAAATCAAACTCCTTGGTGA 1359 0.39 MMKGLSVEENMSNLTSASSEISASSATKNGKASTNLEPQTKRKRNLPGHPDPEAQVLALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNVNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESASISAVNPLFSSHSQFHQSHGFQPLSLKKEQDFNLRPEIPLWLLPTHLNHFQNPNPTTLFPNNSFNSNNITTASPHMSATALLQKASQIGVTTVSKTEPCRPHLMQTHVPSGMVMPSREEIGTTGFSHCLASYGNKAAITSDCFEESSSLLHDVMYGSESSHSQFEAVTAAMSMRGMFDTQRDNNNFEEQYSHFGKSNIIKNGGANDDEMTRDFLSLGAFSQRDLFNISGIDGPLSLHGKQNQIQNQTPW* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0368 452 Gene3D Classic Zinc Finger 66 93 - -
Mtr1g0368 452 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 25 428 - -
Mtr1g0368 452 Gene3D Classic Zinc Finger 125 204 - -
Mtr1g0368 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 428 - -
Mtr1g0368 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Mtr1g0368 452 MobiDBLite consensus disorder prediction 8 41 - -
Mtr1g0368 452 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Mtr1g0368 452 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Mtr1g0368 452 MobiDBLite consensus disorder prediction 1 54 - -
Mtr1g0368 452 SMART c2h2final6 147 167 IPR013087 -
Mtr1g0368 452 SMART c2h2final6 112 142 IPR013087 -
Mtr1g0368 452 SMART c2h2final6 70 92 IPR013087 -
Mtr1g0368 452 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0368 Mtr-Chr1 4224046 4227066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0368 7 294 IDZ Gene Family AT1G55110 60.062 2.62e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g0368 zf-C2H2_jaz 4.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0368 K25870 - vvi:100257789 469.159