Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0364 ATGAATACTCTCTCCCTCCACTTCTACACCCCCCACTCCTTCCTCTCCCTCAAACCAAAACCCCAACCTCGTATCCAATGTTGTTCTACCAACAACAACATAATCGACGACATCGACATGGTAAAAACCAAACAAGGAACCTACGAACAAAAACAGAACAAAGTCTGTGTCCTCTGGGACCTCGACAACAAACCACCACGCGGACCACCCTACAACGCCGCCGTATCTCTCAAAAACCTCGCCGAACGTTTCGGCGACGTAACCGACATCTCCGCTTACGCCAACCGCCACGCTTTCATTCATCTCCCTCAATGGGTTCTCAACCAACGCCGTGAACGTAAAAACCTCGACATCCTCGAACGCAAAGGTATCATCAATCCACCTGAACCGTATGTATGTTCTGTCTGTGGTAGAAAATGTAAAACTAACGTAGATCTTAAGAAACACTTCAAACAGCTTCATCAACGTGAGAGACAGAAGAAGCTGAACCGTTTGAATTCTTTGAAGGGGAAGAAGAGGCAGAAGTATAAGGAGAGGTTTGTGAGTGGTGATGACAAGTATAATGATGCTGTTAGGGAGATTTTGAAACCGAAAGTTGGGTATGGTTTGGCTTCGGAGTTGAGGAGAGCGGGGGTGTTTGTGAAGACTGTGGAGGATAAACCACAGGCTGCTGATTGGGCTTTGAAGAAGCAGATGATGCACTCTATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCCGATGATTCCGATTTTAGTGAGATGTTGAGGAAGGCTAGAGAGGCTAATTTAGGTACTGTTGTTGTTGGGGATGTTGATAGGGCTTTAGGGAGGCATGCTGATTTGTGGGTGCCGTGGAATGCTGTTGAGAATGGTGAGGTTATGGATATGGATTTGATTCCTAGGAATAGAGATAGAAGAAGAACAAATTCAACATCCACAACAATGGATGATTTTGGTGATGTGTTGTTTTTTCACGAGGGCGAGGAAATGGAAGACGATTTTATGTTGGAGTATAGTGATGATGACGATTTTGATGAGGATTCTGATGAAGAAGATGAAGATGGATTTTATATTTATTGA 1083 0.4423 MNTLSLHFYTPHSFLSLKPKPQPRIQCCSTNNNIIDDIDMVKTKQGTYEQKQNKVCVLWDLDNKPPRGPPYNAAVSLKNLAERFGDVTDISAYANRHAFIHLPQWVLNQRRERKNLDILERKGIINPPEPYVCSVCGRKCKTNVDLKKHFKQLHQRERQKKLNRLNSLKGKKRQKYKERFVSGDDKYNDAVREILKPKVGYGLASELRRAGVFVKTVEDKPQAADWALKKQMMHSMSRGIDWLFLVSDDSDFSEMLRKAREANLGTVVVGDVDRALGRHADLWVPWNAVENGEVMDMDLIPRNRDRRRTNSTSTTMDDFGDVLFFHEGEEMEDDFMLEYSDDDDFDEDSDEEDEDGFYIY* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0364 360 CDD PIN_LabA-like 141 271 - -
Mtr1g0364 360 Gene3D - 45 288 - -
Mtr1g0364 360 PANTHER OS06G0166200 PROTEIN 31 350 - -
Mtr1g0364 360 MobiDBLite consensus disorder prediction 336 360 - -
Mtr1g0364 360 ProSitePatterns Zinc finger C2H2 type domain signature. 133 154 IPR013087 -
Mtr1g0364 360 PANTHER - 31 350 - -
Mtr1g0364 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 159 IPR013087 -
Mtr1g0364 360 Coils Coil 151 171 - -
Mtr1g0364 360 SMART c2h2final6 131 154 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0364 Mtr-Chr1 4186471 4189813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0364 7 359 C2H2 Transcription Factor Family AT5G52010 59.836 7.84e-155 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g0364 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0364 - - qsu:111988758 463.381