Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0349 ATGGCATTTGAATTTGGAGTTGTTTTTGTTCTTGTTTTGCTCAGTTGTTTCAATGTCAATTCAGTGGAATCAGATGATGGGTCAACAATGTTGGAGATCAAGAAGTCATTCAGGGATGTGGATAATGTTTTATATGATTGGACTGACTCACCAACATCAGATTATTGTGCTTGGAGAGGGATTACATGTGATAATGTCACCTTCAATGTTGTTGCACTCAATCTTTCTGGTTTGAATCTTGATGGCGAAATTTCGCCTACAATTGGGAAACTTCAAAGCTTGGTGTCTATCGATTTAAAACAAAATCGGTTATCAGGTCAGATACCAGACGAGATTGGCGACTGCTCTCTGTTGCAAACCTTGGACTTTTCGTTTAACGAAATTCGGGGGGATATACCATTTTCAATTTCTAAGCTGAAACAATTGGAATTTCTGGTTTTGAGGAATAATCAGTTGATTGGACCAATTCCTTCAACATTGTCTCAGATTCCTAACTTGAAATATTTGGACCTTGCACACAATAATCTTAGTGGTGAAATTCCAAGGCTTCTATACTGGAATGAAGTTTTGCAGTATCTGGGATTGCGAGGGAATAACTTGGTTGGTTCGCTATCTCCGGACATGTGCCAATTAACTGGATTGTGGTATTTTGATGTGAAAAACAATAGCTTGACAGGAAATATTCCTGAAAACATAGGCAACTGCACCTCCTTCCAAGTCTTGGATTTATCTTCCAACGAGCTAACCGGAGAGATTCCATTCAATATCGGTTTTCTACAAATAGCAACCTTGTCATTGCAAGGCAATAATCTTTCTGGACATATTCCACCCGTGCTTGGTCTCATGCAAGCGCTTACTGTGTTAGACTTGAGTTATAACATGCTAACTGGATCAATCCCTCCTATTTTGGGTAATTTGACTTACACAGCAAAATTGTACTTGCATGGAAATAAGCTGACTGGCTTCATCCCTCCGGAGCTTGGAAATATGACACAGCTTAATTATTTGGAACTGAATGATAATCTCCTAAGTGGACATATCCCTCCCGAGCTTGGAAAGCTTACTTCTCTATTTGACTTAAATGTTGCTAACAACAATCTTGAGGGGCCAATTCCCAGTGACCTTAGCTTGTGTACAAGCCTTACCGGCCTAAATGTGCATGGGAATAAGCTGAATGGAACAATACCTGCTACTTTTCATAGCTTGGAGAGTATGACTTCTCTGAATCTTTCGTCAAACAACCTTCAGGGTCCCATTCCAATTGAATTGTCACGGATTGGTAATTTGGATACATTGGATATTTCAAACAACAAAATATCTGGACCAATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGCTGAATCTGAGCAGAAACAATTTAACAGGACCTATTCCCGCAGAGTTTGGTAATCTCAAAAGTATCATGGAAATTGATCTTTCCCATAACCAACTCTCTGAGATGATTCCTGTAGAACTTGGTCAGCTTCAGAGCATAGCATCATTGAGACTTGAAAACAATGACTTAACTGGGGACGTGACATCACTTGTAAATTGTCTTAGTCTCTCTCTGCTTAATGTGTCCTATAACCAGCTAGTTGGTCTTATTCCCACAAGCAACAACTTCACCAGGTTTTCACCTGACAGTTTCATGGGAAACCCAGGTCTTTGTGGTAATTGGCTGAATTCTCCATGTCAAGGTTCTCATCCTACGGAACGTGTTACATTATCTAAGGCAGCTATACTGGGAATTACTCTTGGTGCCCTTGTAATTCTTCTGATGATACTGCTGGCTGCTTTCCGACCACACCATCCGTCTCCGTTTCCGGATGGATCACTCGAGAAACCTGGTGACAAATCAATTATTTTCTCACCTCCGAAGCTAGTGATTCTTCATATGAACATGGCACTTCATGTGTACGACGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAGTTGGAAGTGGTGCGTCTAGTACGGTTTATAAATGTGTTCTTAAAAATTGCAAGCCTGTTGCCATTAAGAGGCTCTATTCTCACTATCCGCAATACTTGAAAGAATTCGAGACTGAACTTGCGACAGTCGGCAGCATTAAGCACCGGAATCTGGTCTGTCTCCAAGGCTACTCTTTGTCACCATATGGCCACCTTCTCTTTTATGACTACATGGAAAATGGTAGTCTATGGGATCTTCTTCATGGGCCAAGTAAGAAGAAAAAACTTGATTGGCATCTGCGTTTGAAAATAGCACTTGGAGCAGCGCAAGGGCTCTCATATTTACACCATGATTGCAGTCCTCGCATCATCCACAGGGATGTGAAATCTTCAAATATTTTACTAGACTCAGATTTTGAGCCACATCTCACAGATTTTGGCATTGCCAAAAGCCTATGCCCTACAAAGTCCCATACTTCTACTTACATAATGGGCACAATTGGATACATAGACCCTGAGTATGCCAGAACTTCCCGACTCACGGAGAAATCCGATGTCTACAGCTATGGTATTGTTTTGCTTGAATTGCTAACTGGGAGAAAAGCTGTTGACAATGAGTCCAACCTCCATCATCTAATTTTGTCCAAGACAGCTAGCAATGCAGTAATGGAAACGGTTGATCCCGACGTAACTGCCACATGCAAGGACCTAGGAGCAGTAAAGAAAGTTTTTCAGCTTGCTCTATTATGCACAAAGAGGCAGCCAGCCGATAGACCAACGATGCATGAAGTTTCACGTGTATTAGGAAGTCTCATGCCGTCAGTCGCTCCCGCGAAACAACTAACTCCTCTACAGCCGGCATCTCATCCATCTGCCAAAGTTCCATGCTACATGGATGAGTATGCAAATCTCAAGACTCCTCATTTGGTCAACTGTCCTTCCATGAGCACTTCAGATGCTCAACTCTTTCTCAAGTTTGGAGAAGTTATCTCCCAGAACAGTGAGTGA 2958 0.4162 MAFEFGVVFVLVLLSCFNVNSVESDDGSTMLEIKKSFRDVDNVLYDWTDSPTSDYCAWRGITCDNVTFNVVALNLSGLNLDGEISPTIGKLQSLVSIDLKQNRLSGQIPDEIGDCSLLQTLDFSFNEIRGDIPFSISKLKQLEFLVLRNNQLIGPIPSTLSQIPNLKYLDLAHNNLSGEIPRLLYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVKNNSLTGNIPENIGNCTSFQVLDLSSNELTGEIPFNIGFLQIATLSLQGNNLSGHIPPVLGLMQALTVLDLSYNMLTGSIPPILGNLTYTAKLYLHGNKLTGFIPPELGNMTQLNYLELNDNLLSGHIPPELGKLTSLFDLNVANNNLEGPIPSDLSLCTSLTGLNVHGNKLNGTIPATFHSLESMTSLNLSSNNLQGPIPIELSRIGNLDTLDISNNKISGPIPSSLGDLEHLLKLNLSRNNLTGPIPAEFGNLKSIMEIDLSHNQLSEMIPVELGQLQSIASLRLENNDLTGDVTSLVNCLSLSLLNVSYNQLVGLIPTSNNFTRFSPDSFMGNPGLCGNWLNSPCQGSHPTERVTLSKAAILGITLGALVILLMILLAAFRPHHPSPFPDGSLEKPGDKSIIFSPPKLVILHMNMALHVYDDIMRMTENLSEKYIVGSGASSTVYKCVLKNCKPVAIKRLYSHYPQYLKEFETELATVGSIKHRNLVCLQGYSLSPYGHLLFYDYMENGSLWDLLHGPSKKKKLDWHLRLKIALGAAQGLSYLHHDCSPRIIHRDVKSSNILLDSDFEPHLTDFGIAKSLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTASNAVMETVDPDVTATCKDLGAVKKVFQLALLCTKRQPADRPTMHEVSRVLGSLMPSVAPAKQLTPLQPASHPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE* 986
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0349 985 SUPERFAMILY Protein kinase-like (PK-like) 630 918 IPR011009 -
Mtr1g0349 985 Pfam Protein kinase domain 655 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0349 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672|GO:0006468
Mtr1g0349 985 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Mtr1g0349 985 Gene3D Transferase(Phosphotransferase) domain 1 728 930 - -
Mtr1g0349 985 ProSiteProfiles Protein kinase domain profile. 652 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0349 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 972 - -
Mtr1g0349 985 ProSitePatterns Protein kinases ATP-binding region signature. 658 680 IPR017441 GO:0005524
Mtr1g0349 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 8 972 - -
Mtr1g0349 985 SUPERFAMILY L domain-like 257 559 - -
Mtr1g0349 985 SMART LRR_typ_2 450 473 IPR003591 -
Mtr1g0349 985 SMART LRR_typ_2 91 115 IPR003591 -
Mtr1g0349 985 SMART LRR_typ_2 211 235 IPR003591 -
Mtr1g0349 985 SMART LRR_typ_2 474 498 IPR003591 -
Mtr1g0349 985 SMART LRR_typ_2 163 187 IPR003591 -
Mtr1g0349 985 SMART LRR_typ_2 402 426 IPR003591 -
Mtr1g0349 985 SMART LRR_typ_2 282 306 IPR003591 -
Mtr1g0349 985 SMART LRR_typ_2 330 354 IPR003591 -
Mtr1g0349 985 Gene3D Phosphorylase Kinase; domain 1 628 727 - -
Mtr1g0349 985 Pfam Leucine rich repeat 428 487 IPR001611 GO:0005515
Mtr1g0349 985 Gene3D Ribonuclease Inhibitor 262 570 IPR032675 -
Mtr1g0349 985 Gene3D Ribonuclease Inhibitor 187 261 IPR032675 -
Mtr1g0349 985 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Mtr1g0349 985 SUPERFAMILY L domain-like 26 320 - -
Mtr1g0349 985 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Mtr1g0349 985 SMART serkin_6 652 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0349 985 Pfam Leucine Rich Repeat 165 183 IPR001611 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr1g0349 Mtr-Chr1 3976472 3984434 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0349 93 984 Receptor kinase-like Gene Family AT5G07180 64.502 0.0 1125
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Mtr1g0349 Pkinase 1.5e-43 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0349 K20718 - gmx:100782307 1682.54