Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0343 ATGAAAAAGAATGATTTAGGAGAAGAGTTTGAAGATAACACTAACTTCATTAAAGTTGCGTTAACAGAAAAATCCATGGGGTGGGGTCACCTTGAAAGAAATGGCTCTGATTCCGTTACCGACGCCGATGCAGCTCCGAGCACCAGCACGGCGCCGGAGTCACGGCGGTTTCCACCAGCTGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAGTACGCCTCTTTCGTTTACGAAGCCTGTCGCGACGCTTTCCGCCATCTCTTTGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAGCTTTTAGGGCAAATGCTTTACTATGTTCTCACAACTGGCTCAGGACAACAGACACTTGGTGAGGAATACTGTGATATCACTCAGGTTGCAGGATCTTATGGACTTCCTCCTACACCAGCCAGGCGTGCTTTGTTCATTGTATATCAGTCAGCGATTCCATATATTGCAGAACGAATCAGTTCTAGAATTGCTTCCCGAGGCATTATCCTTTCTGACTATGAGTCTGCTGAGATTTACGGTGAAAATGCCCATGGGAGTAGTAGTTCTCGGGTTTCTGAAATTTCTCCTGCATCTGCCTCAGGACAGTCTACATCAACTTTGATGAGGTTGAAGCATAAACTCGGTGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGCGAGTTATTGCAGTTGCTTCTTCGTGCTAACCTCATGTTGTTTTATTTTGAAGGCCTATATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAAGCATCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGGGCTGCGTCGAAGAAATTTTTCATCGATTGCTGCTTCAGTTCATCAGGCATCCTTTGCTACCCACCATACATCAGCAGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTCCAGAAGCTGATAAAGGAAGTTGGGTCCCTGGATCCTCATCTTCTGAGCATAATGCAACTAATGGGGTAAGCAAATGCACGCTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTTTAGTTTGTGTCTATCATTCAGACTTCTAG 1263 0.4497 MKKNDLGEEFEDNTNFIKVALTEKSMGWGHLERNGSDSVTDADAAPSTSTAPESRRFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGSYGLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILSDYESAEIYGENAHGSSSSRVSEISPASASGQSTSTLMRLKHKLGGFWLHMVQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEGLRRRNFSSIAASVHQASFATHHTSAGHGLPVLNEEGNLASPEADKGSWVPGSSSSEHNATNGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0343 420 MobiDBLite consensus disorder prediction 40 55 - -
Mtr1g0343 420 PANTHER PEROXISOME BIOGENESIS FACTOR 10 53 417 - -
Mtr1g0343 420 SUPERFAMILY RING/U-box 365 409 - -
Mtr1g0343 420 Pfam Pex2 / Pex12 amino terminal region 72 303 IPR006845 -
Mtr1g0343 420 ProSitePatterns Zinc finger RING-type signature. 381 390 IPR017907 -
Mtr1g0343 420 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 53 417 - -
Mtr1g0343 420 MobiDBLite consensus disorder prediction 30 64 - -
Mtr1g0343 420 SMART ring_2 366 403 IPR001841 -
Mtr1g0343 420 Pfam Zinc finger, C3HC4 type (RING finger) 365 409 - -
Mtr1g0343 420 CDD RING-HC_PEX10 365 404 - -
Mtr1g0343 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 417 IPR013083 -
Mtr1g0343 420 ProSiteProfiles Zinc finger RING-type profile. 366 404 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0343 Mtr-Chr1 3875569 3885599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0343 333 416 C3H Transcription Factor Family AT3G58030 32.558 7.49e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0343 K13346 - gmx:100783914 689.108