Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0338 ATGGACGTTGTAGGTGCTCCGTACAATCCTCGTACTGTCGAAGAAGTCTTTCGAGATTTCAAAGGTCGCAGAGCTGCCTTAATCAAAGCCCTCACCACCGATGTCGATGTATTCTACCAGCAGTGTGATCCTGAGAAGGAAAACCTTTGCCTTTATGGATTTCCAAGTGAGCAGTGGGAGGTGAATCTGCCAGCTGAGGAAGTACCGCCTGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCTAGAGATGGAATGCAAGAAAAGGATTGGCTATCTTTGGTTGCCGTACACAGTGATGCTTGGTTGCTTTCTGTGGCCTTTTATTTCGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGAAGCGACTATTTAATATGATCAATGATCTTCCAACAATCTTTGAAGCTGTTACAGGGTCTGGCAGGAAACAAGGAAAGGAAAAGTCAGTTTCTAATAATAGCAGTACCAAATCCAAATCAAACTCTAAGCGAAGTTCTGAACCTCAGCCAAAGTTTTCAAAACCAATGGCAATGGCAATGCAAATGCAGTCAAAGGATGAGGTTGAGGACGAGGATGGTGTAGGTGTGGACGAGGAAGATGAGGAAGAACACGGAGAGACTTTGTGTGGGGCATGTGGAGACAGCTATGCAGCTGACGAGTTTTGGATTTGCTGTGACATATGTGAGAAATGGTTTCATGGAAAATGCGTGAAGATTACTCCGGCAAGGGCTGAGCATATCAAACAGTACAAATGTCCAGCTTGCAGCAACAAGAGAGCTCGCCCTTGA 792 0.4545 MDVVGAPYNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEAVTGSGRKQGKEKSVSNNSSTKSKSNSKRSSEPQPKFSKPMAMAMQMQSKDEVEDEDGVGVDEEDEEEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSNKRARP* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0338 263 MobiDBLite consensus disorder prediction 145 170 - -
Mtr1g0338 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 258 IPR013083 -
Mtr1g0338 263 ProSitePatterns Zinc finger PHD-type signature. 210 256 IPR019786 -
Mtr1g0338 263 ProSiteProfiles Zinc finger PHD-type profile. 207 259 IPR019787 -
Mtr1g0338 263 PANTHER CPG BINDING PROTEIN 7 263 IPR045104 GO:0006355|GO:0042393
Mtr1g0338 263 Pfam PHD-finger 210 259 IPR019787 -
Mtr1g0338 263 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Mtr1g0338 263 SMART PHD_3 209 257 IPR001965 -
Mtr1g0338 263 CDD PHD_AL_plant 209 259 IPR044104 -
Mtr1g0338 263 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 263 - -
Mtr1g0338 263 MobiDBLite consensus disorder prediction 139 203 - -
Mtr1g0338 263 SUPERFAMILY FYVE/PHD zinc finger 199 260 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0338 Mtr-Chr1 3811894 3816510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0338 1 262 Alfin-like Transcription Factor Family AT3G42790 71.483 3.97e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mtr1g0338 Alfin 1.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0338 - - cam:101493315 426.017