Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0336 ATGACAGAGAAAAATCCAAGAACAGCAAATTCATCATCACCTGAAAGTGATTTTAGCAACCAGCAGTGGCCATTTGAACTCTCTGACTACTTGAGTTTCGATGACAATGAATGGCTACAAAACAATCCAACCACTGAGTCTTTAGTTTTTCAAGCCAACGAAGTAGCAGGTGGTAGCCACATTGAGGGGTCTTCTAGTTCAATCAGAGATACTAATAATATGAATATGAGTGGAAACGAGAATTGGAAGAAGGAAGTTAAGGAAAGAGTTGCATTCAAAACAAAGTCACTGATTGAAATACTTGATGATGGGTACAGATGGAGGAAGTATGGAAAGAAAATGGTTAAGAATAGCCCTAATCCAAGGAATTATTATAGGTGTTCAGTGGAGGGGTGTCCTGTAAAAAAAAGAGTTGAGAGAGATAATAATGATTCGAGTTATGTGATAACAACTTATGAAGGCATGCACACCCATCCAAATTCTTGCTAG 489 0.3804 MTEKNPRTANSSSPESDFSNQQWPFELSDYLSFDDNEWLQNNPTTESLVFQANEVAGGSHIEGSSSSIRDTNNMNMSGNENWKKEVKERVAFKTKSLIEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNNDSSYVITTYEGMHTHPNSC* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0336 162 Pfam WRKY DNA -binding domain 102 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0336 162 ProSiteProfiles WRKY domain profile. 96 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0336 162 Gene3D WRKY domain 88 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g0336 162 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 161 IPR044810 GO:0003700
Mtr1g0336 162 MobiDBLite consensus disorder prediction 59 80 - -
Mtr1g0336 162 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 161 - -
Mtr1g0336 162 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g0336 162 SUPERFAMILY WRKY DNA-binding domain 97 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g0336 162 SMART WRKY_cls 101 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0336 Mtr-Chr1 3799317 3800298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0336 36 158 WRKY Transcription Factor Family AT5G26170 50.355 2.25e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr1g0336 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0336 - - gmx:100796836 194.126