Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0329 ATGACTACTACTAAAAAGATAACATGGAAGTCTATGATCTTGATCCTAAATTGTTACAAGAGTAAATACCCTTTGGAGGAATCAGAGAAACATGTTCTAAAACAAGGTTCTTTGCAAAGACTATGTTTATCAGATATAAGCAATTCAAGTTCAAGTCAAGCTATTGAAGATCTTTCAGTTTCTTTTGCTGGTTCTAAACTTCATGCATTCACACTTGAGGAGCTAAAAGAAGCAACACATAATTTCTCATGGAGTAATATGTTAGGTGAAGGTGGATTTGGACCTGTTTATAAGGGTTTTGTTGATGATAAACTTAGACAAGGGTTAAAGGCTCAAACTGTAGCTGTTAAATGTTTGGACTTGGATGGCTTGCAAGGTCATAGAGAGTGGCTGGCAGAGATTATATTTCTTGGACAACTAAGTCATCCACATCTTGTGAAGTTAATTGGATATTGTTTTGAAGATGAACACAGGCTTTTGGTGTATGAATACATGCCAAGAGGTAGCTTGGAGAATCAATTATTCAGAAGATACTCTGCTACTATGCCATGGTCAACAAGGATGAAAATCGCATTGGGAGCTGCTAAAGGCTTAGCATTTCTTCATGAAGCAGATAAACCTGTAATATACAGAGATTTCAAAGCTTCAAATATCTTACTAGACTCGGATTATACAGCTAAGTTATCAGACTTTGGACTAGCTAAGGATGGTCCTGAAGGAGAAGAGACACATGTAACGACACGCGTAATGGGAACACATGGTTATGCGGCTCCTGAGTACATCATGACAGGTCACCTCACAACAAAGAGTGATGTGTATAGCTATGGAGTGGTTCTATTAGAATTGCTCACAGGAAGAAGGGTAGTGGATAAGTCTTCAGAATCAAGTAGAGGGAAAAACTTGGTGGAATGGGCAAGACCAATGTTGAGAGATCAAAAGAAGCTGCACCGTATTATCGACCGTAGACTTGAAGGTCAATATCCTACCAAAGGAGCTTTGAAAGTTGCTATGTTAGCTTTTAAATGTTTGAGTCATCACCCAAATCCAAGACCCTTCATGAGTGATGTTGTTAAGGTTTTGGAACCACTTCAAGATTTTGATGATGTTTTTATAGGACCATTTGTTTATGTTGCTGTAAATGAAAATGGTGACAAAGATACAATATAG 1167 0.3779 MTTTKKITWKSMILILNCYKSKYPLEESEKHVLKQGSLQRLCLSDISNSSSSQAIEDLSVSFAGSKLHAFTLEELKEATHNFSWSNMLGEGGFGPVYKGFVDDKLRQGLKAQTVAVKCLDLDGLQGHREWLAEIIFLGQLSHPHLVKLIGYCFEDEHRLLVYEYMPRGSLENQLFRRYSATMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSSESSRGKNLVEWARPMLRDQKKLHRIIDRRLEGQYPTKGALKVAMLAFKCLSHHPNPRPFMSDVVKVLEPLQDFDDVFIGPFVYVAVNENGDKDTI* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0329 388 CDD STKc_IRAK 88 363 - -
Mtr1g0329 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Mtr1g0329 388 PANTHER KINASE 1B 22 385 - -
Mtr1g0329 388 Pfam Protein tyrosine and serine/threonine kinase 84 360 IPR001245 GO:0004672|GO:0006468
Mtr1g0329 388 ProSiteProfiles Protein kinase domain profile. 82 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0329 388 PANTHER OS01G0588500 PROTEIN-RELATED 22 385 - -
Mtr1g0329 388 Gene3D Transferase(Phosphotransferase) domain 1 165 370 - -
Mtr1g0329 388 Gene3D Phosphorylase Kinase; domain 1 43 164 - -
Mtr1g0329 388 SUPERFAMILY Protein kinase-like (PK-like) 59 361 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0329 Mtr-Chr1 3738720 3741819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0329 68 360 Glycoside Hydrolase AT3G07070 52.703 4.84e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mtr1g0329 PK_Tyr_Ser-Thr 6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0329 - - gmx:100802636 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0329 1 3738720 3741819 Mtr1g0329 1 3738720 3741819 ECH
Mtr3g3818 3 52005685 52008143 Mtr1g0329 1 3738720 3741819 ECH
Mtr2g1636 2 18426731 18430318 Mtr1g0329 1 3738720 3741819 ECH
Mtr8g0623 8 7349363 7351954 Mtr1g0329 1 3738720 3741819 ECH