Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0324 ATGGACATAAATATCAATGTCACCACAACTGATCAAAGCCCTAATAGTAGTAATAATAAGATGTATAGAGGGGTGAGGAAGAGAAAATGGGGAAAATGGGTATCTGAAATTAGGCTTCCAAATAGTAGGGAGAGAATATGGTTAGGATCATATGACACACAAGAAAAAGCAGCTAGGGCATTTGATGCAGCCCTATATTGTCTACGTGGTCCTCATGCAAGTTTCAATTTCCCTAACACACCTCTTACCATCAATGTAGCTGTGAATCATGGTGTTGGTCATCAATCTCTTTCACCAGAAGAGATTCAAGACGTTGCTGCTAAGTTTGCAAATGAGTCACCACCAATTGAGCTCACTCACGAAGATGATCAACAAGTACCTTCAGAAGCACAAAATGATACCATTTCCAATCATTCTTATTCATGCCCACTTAATGATAATGATGGGAGGGTGCAAGTAGATTATGGAGACTTGAGGAGAATGGATTGGAAATTTGAGGATATGTTTGATGACTTGAATGGGGTTGCTAATTGCTCTAATTTGTATGGGCAAGAAAATATGCAATACTCAACACAACTTGTTGAAGAGGATAATGTGGACCAAATTGAATGTGAAGATACTTTTTCTGATCATTCATTCCTTTGGAGTTGGAACTTTTGA 660 0.3833 MDININVTTTDQSPNSSNNKMYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGPHASFNFPNTPLTINVAVNHGVGHQSLSPEEIQDVAAKFANESPPIELTHEDDQQVPSEAQNDTISNHSYSCPLNDNDGRVQVDYGDLRRMDWKFEDMFDDLNGVANCSNLYGQENMQYSTQLVEEDNVDQIECEDTFSDHSFLWSWNF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0324 219 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Mtr1g0324 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 9 219 - -
Mtr1g0324 219 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Mtr1g0324 219 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Mtr1g0324 219 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Mtr1g0324 219 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g0324 219 MobiDBLite consensus disorder prediction 119 141 - -
Mtr1g0324 219 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Mtr1g0324 219 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Mtr1g0324 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 219 - -
Mtr1g0324 219 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Mtr1g0324 219 Pfam AP2 domain 22 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0324 Mtr-Chr1 3657239 3657898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0324 15 187 AP2-EREBP Transcription Factor Family AT1G74930 45.304 4.21e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g0324 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0324 - - mtr:MTR_1g014820 345.895