Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0323 ATGACTAGTTCCAATCCTACTAGTAGTATCAATGTCACAACAACTGATCACAACCCTAATAGTAGTAATGATAAGATGTATAGAGGGGTGAGGAAGAGAAAATGGGGAAAATGGGTATCTGAAATTAGGCTTCCAAATAGTCGTGAGAGAATATGGTTAGGATCATATGACACACAAGAAAAAGCAGCTAGGGCATTTGATGCAGCCCTATATTGTCTACGTGGTCCTCATGCAAGTTTCAATTTCCCTAATACACCTTTTACCATCAATGTAGCTTTTCATGGTTACCAATCTCTTTCACCACAAGAAATTCAAGAAGTTGCTGCTAAGTATGCAAATGAGTCACCACCAATTGAGCTCACTCAAGAACAAGATCATCAAGTATCATCAGAATCACAAAATGATGCCACCAATTCCAATAACTCTTATTCATGTTCACTTAGTGATAATGATGGGAGGGAACAAGTAGATTATGGAGACTTGAGGATGATGGATTGGACATTTAAGGATATGTTTGTTGAGATGAATGGGGTTGCTAATTGCTTTGAATTATTTTATGGGCTAGAAAATGATACCAATTCAAATGCTTATTCATATCCTCTAGATAATGATATTGGTGATTTGAGGACAATGGATTGGACATTTGAGGATATGAATGGGGTTGTTAATGACTCTGATTTTTATGGGCTACAAAATATGCAATGCTCAACTCAACTTTTTGAAGAGGATAATGTGGACCAAATTGAATGTGAAGATGCCTTTTCTAATCATTCAATCCTTTGGAGTTGGAACTTTTGA 798 0.3647 MTSSNPTSSINVTTTDHNPNSSNDKMYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGPHASFNFPNTPFTINVAFHGYQSLSPQEIQEVAAKYANESPPIELTQEQDHQVSSESQNDATNSNNSYSCSLSDNDGREQVDYGDLRMMDWTFKDMFVEMNGVANCFELFYGLENDTNSNAYSYPLDNDIGDLRTMDWTFEDMNGVVNDSDFYGLQNMQCSTQLFEEDNVDQIECEDAFSNHSILWSWNF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0323 265 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Mtr1g0323 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 265 - -
Mtr1g0323 265 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Mtr1g0323 265 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677
Mtr1g0323 265 MobiDBLite consensus disorder prediction 1 25 - -
Mtr1g0323 265 MobiDBLite consensus disorder prediction 120 151 - -
Mtr1g0323 265 MobiDBLite consensus disorder prediction 1 26 - -
Mtr1g0323 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 11 265 - -
Mtr1g0323 265 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Mtr1g0323 265 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Mtr1g0323 265 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Mtr1g0323 265 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Mtr1g0323 265 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0323 Mtr-Chr1 3641864 3642671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0323 20 168 AP2-EREBP Transcription Factor Family AT1G74930 52.000 2.21e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g0323 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0323 - - mtr:MTR_1g014820 560.066