Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0322 ATGACTTGTTCCAATCCTACTAGTAGTATCAATGTCACCACCAATGATCACAACACACCTTGTTCCAACAATAAACCTCTAGATAAGATGTACAAAGGGGTGAGGAAGAGAAAATGGGGAAAATGGGTATCTGAAATTAGGCTTCCAAATAGTAGGGAGAGAATATGGTTAGGATCATATGACACACAAGAAAAAGCAGCTAGGGCATTTGATGCAGCCCTATATTGTCTACGTGGTCCTCATGCTAGTTTCAATTTCCCTAACACACCTCTTACCATCAATTTAGTTTTTCATCATAGTGTTAGTCACAACTCTCTTTCCCCTCAAGAGATTCAAGAGATTGCTGCAAAATTTGCCAATGAATTACCAATTGAGCTTACTCAAGAAGAAGATCAACAAGTACCTTCAGAATCACAAAATGATGCCAATTCCAATTCTTATTCATATCCTCTAGATAATGATATTGGTGATTTGAGAAGGATGGATTGGAGATTTGAGGATATGTTTGATGACATGAATAGGGTTGCTAATTGCTCTAATTTTTATGGGCTACAAAATATGCAATATTCAACTCAACTTTTTGAAGAGGATAATGTGGACCAAATTGAATGTGAAGATACCTTTTCTAATCATTCAATCCTTTGGAATTGGAATTTTTGA 660 0.3606 MTCSNPTSSINVTTNDHNTPCSNNKPLDKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGPHASFNFPNTPLTINLVFHHSVSHNSLSPQEIQEIAAKFANELPIELTQEEDQQVPSESQNDANSNSYSYPLDNDIGDLRRMDWRFEDMFDDMNRVANCSNFYGLQNMQYSTQLFEEDNVDQIECEDTFSNHSILWNWNF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0322 219 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Mtr1g0322 219 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Mtr1g0322 219 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Mtr1g0322 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 10 219 - -
Mtr1g0322 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 219 - -
Mtr1g0322 219 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Mtr1g0322 219 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Mtr1g0322 219 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Mtr1g0322 219 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
Mtr1g0322 219 Pfam AP2 domain 31 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0322 Mtr-Chr1 3630563 3631222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0322 24 181 AP2-EREBP Transcription Factor Family AT1G74930 51.515 8.69e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g0322 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0322 - - mtr:MTR_1g014800 465.692