Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0320 ATGTCTTGTTCCAATCCTACTAGTAGCATCAATGTCACCACAACTGATCAAAACCCTAATATCAATGTCACACCAACTGATCAAAACCCTAATAGTAGTGATAATAAGATATACAGGGGGGTGAGGAAGAGAAATTGGGGAAAATGGGTATCTGAGATTAGGCTTCCAAATAGTAGGGAGAGAATATGGTTAGGATCATATGACACACAAGAGAAAGCAGCAAGAGCATTTGATGCAGCCCTTTATTGTCTACGTGGTCCTCATGCAAGTTTCAATTTCCCTAACACACCTCTTACCATCAATGTAGCTGTGAATCATGGTGTTGGTCACCAATCTCTTTCACCAGAAGAAATCCAAGAGATTGCTGCGAAATTTGCCAATGAGTCGTCGCCACCAATTGAGCTCACTCAAGAAGAAGATCATCAAGTACCTTCAGATCCTCTAGAATCACAAAATGATACCAATTCAAATGCTTATTCATATCCTTTAGATAATGATATTGGTGATTTGAGGAGGATGGATTGGACATTTGATGATATGTTTGAGGACATGAATGGAGTTGCTAATGGCTCTGATTTTTATGGGCTGCAAAATATGCAATACTCAACTCCACCCTTTGAAGAGGATAATGTGGACCAAATTGAATGTGAAGATACTTTTACTAATCATTCAACCCTTTGGAATTGGAACTTTTGA 696 0.3879 MSCSNPTSSINVTTTDQNPNINVTPTDQNPNSSDNKIYRGVRKRNWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGPHASFNFPNTPLTINVAVNHGVGHQSLSPEEIQEIAAKFANESSPPIELTQEEDHQVPSDPLESQNDTNSNAYSYPLDNDIGDLRRMDWTFDDMFEDMNGVANGSDFYGLQNMQYSTPPFEEDNVDQIECEDTFTNHSTLWNWNF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0320 231 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Mtr1g0320 231 MobiDBLite consensus disorder prediction 1 36 - -
Mtr1g0320 231 MobiDBLite consensus disorder prediction 136 162 - -
Mtr1g0320 231 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Mtr1g0320 231 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Mtr1g0320 231 CDD AP2 36 96 IPR001471 GO:0003700|GO:0006355
Mtr1g0320 231 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Mtr1g0320 231 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Mtr1g0320 231 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Mtr1g0320 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 22 231 - -
Mtr1g0320 231 MobiDBLite consensus disorder prediction 147 162 - -
Mtr1g0320 231 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Mtr1g0320 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0320 Mtr-Chr1 3619159 3619854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0320 27 193 AP2-EREBP Transcription Factor Family AT1G74930 48.235 7.60e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g0320 AP2 8.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0320 - - mtr:MTR_1g014800 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0320 1 3619159 3619854 Mtr1g0320 1 3619159 3619854 ECH
Mtr3g3828 3 52106778 52107631 Mtr1g0320 1 3619159 3619854 ECH