Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0316 ATGGAATCAGAAAATTTGGTGAAACAAGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAGAAATTCGAAGACGCTGTGTCATCTCTCAAATCTCTGCTCCAAACCACGTATCCATTAGCTTCCACCTCTCTTCGAAAATCGTTTTATTCTGTTATATGCCGAGTTGCGACAGTGTTGAAGACGAGATATACAGCACCCGGTTTTTGGAGTGCTGGCCTGAGCCTTTTTGAGCAGGCTATATTGTTTGTTTCTGAACCCTCTGAAAAGGAGCACTTGAAGGCTTGCATTGCTCAGGCCAGGGAACATTTGCATCTAGAAGACAACCCTTCACAAACTTCGCAACCTGCAGTAAATCGTGAAAATAGAGGATATCTTTTTGAGGGGCACCTTACGGTAGATCAAGAGCCACCACAACCTGAATGGATGGTGCAGGCAAATCTCTTGAATGAAGCTGTTCGACTATTTGAAGCTCAACCCTCTCAGGGTTTAGCAACAAATGACACCACGCCAGAGGATGTTGCTAGTGTGCTTGAAATGCTTAGAAATAGATTGGAAGAAGTTGTGCCCCTGATGGAGACTGGTGGTCCTGCAGCTCCAAGAGTTCCTCCTGCGAGTAAAGAAGTTGTCTCAAAACTTCCTGTCATTACTCTCACCGAAGAGATCCTGTCTAAGATGGGGAAAGATGCAGAGTGTGCCATTTGCAGGGAAAATTTGGTGTTAAATGACCAAATGCAAGAGTTACCGTGCAAGCACACATTCCACCCTCCATGTTTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCTATCTGTCGTTATGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAACGTGAAAAGGAAGCGGAAGAGGAGAGGAAAGGTGCTGCAAATGCTCTTCGAGGCGGTGAATTCATGTATGTTTAG 942 0.4512 MESENLVKQELEELQKQLGKKQKFEDAVSSLKSLLQTTYPLASTSLRKSFYSVICRVATVLKTRYTAPGFWSAGLSLFEQAILFVSEPSEKEHLKACIAQAREHLHLEDNPSQTSQPAVNRENRGYLFEGHLTVDQEPPQPEWMVQANLLNEAVRLFEAQPSQGLATNDTTPEDVASVLEMLRNRLEEVVPLMETGGPAAPRVPPASKEVVSKLPVITLTEEILSKMGKDAECAICRENLVLNDQMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAANALRGGEFMYV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0316 313 SMART ring_2 233 273 IPR001841 -
Mtr1g0316 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Mtr1g0316 313 Coils Coil 7 27 - -
Mtr1g0316 313 PANTHER ABI3-INTERACTING PROTEIN 2-1 7 307 - -
Mtr1g0316 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 307 - -
Mtr1g0316 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
Mtr1g0316 313 SUPERFAMILY RING/U-box 227 280 - -
Mtr1g0316 313 Pfam Ring finger domain 232 274 IPR001841 -
Mtr1g0316 313 Coils Coil 284 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0316 Mtr-Chr1 3573859 3577581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0316 7 313 C3H Transcription Factor Family AT5G20910 61.812 1.80e-125 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0316 K16274 - gmx:100798732 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0316 1 3573859 3577581 Mtr1g0316 1 3573859 3577581 ECH