Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0312 ATGGATCAAAATATTTTGGAAGAAGTAACAGTCTTAGAGGAACCAATTATAGCTGATTTTCAAAGAATTGTGGAGCTTACAGATTATACAGATATAGGGTCTTCTCAGTTAGCTAATCTCGTGAAACATTGGGAGTATAAGCAGGCAAATGCAGTTTGCCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAAGGAGGAAGTTGAGCTTAAAAAGTGTGAGATACTTGAAGACAATAATAGATTCGAGGAAGGAAGCTACGGTGGAGAAAAACATCCGGATTCAATATCGGACTATGTTGCAATAAGGGAAAACGACGTCATTCAAAACAAAAGAGTTGAAATTGAGGCTGAGTATGATTCCGTTGTTTACTGGAAACATCGAGCGATCGAATTGGAAAGACAGTTGGAGGCAAGTTATAGGAGAGAGGAGATATTAAAGGAAAAGCTGCAAGAAAGTATAGAGGCTATTCAAAGACAATCATCACCTGTGGAGGAACTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATAGGCCATCAGGACAAAGAGTTGCGGTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACCTCATAGGAAAAACGGATGTTGAAATTTTCACGGGAGCAGGTGTGAAGGAGTCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAGTACCTGCAAAAAGGGAAATAACTTTTGAGACAGAACTACTTGGATCAAAGACATTTTTGTTGTATGCAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTAAACCATATGGGAATGGAAATAACCGATCAGGTGAGAAAAAGAGAAAAAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCAAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACAATGAGAGCAAAACAAATGTTGGCAACAATGTCTCATGAGATAAGATCACCACTTTCTGATGTTGTTAGCATGGCCAAAATTCTTACTACAACAAAACTTGACAGAGAGCAAAGACAGCTCTTAGATGCCATGATATCGTCAGGAGATTTGGTTCTTCAACATATTACTGATATACTAGATCCTTCCAAGGCTGAGTCGGGTTAG 1170 0.3829 MDQNILEEVTVLEEPIIADFQRIVELTDYTDIGSSQLANLVKHWEYKQANAVCLLREELDNLSKQKEEVELKKCEILEDNNRFEEGSYGGEKHPDSISDYVAIRENDVIQNKRVEIEAEYDSVVYWKHRAIELERQLEASYRREEILKEKLQESIEAIQRQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDLIGKTDVEIFTGAGVKESQDFKREVMEKGVPAKREITFETELLGSKTFLLYAEPVFSKAGETIGVNHMGMEITDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSDVVSMAKILTTTKLDREQRQLLDAMISSGDLVLQHITDILDPSKAESG* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0312 389 Coils Coil 55 75 - -
Mtr1g0312 389 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 321 389 IPR036097 GO:0000155|GO:0007165
Mtr1g0312 389 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 2 389 - -
Mtr1g0312 389 Gene3D - 305 389 - -
Mtr1g0312 389 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 2 389 - -
Mtr1g0312 389 CDD HisKA 326 385 IPR003661 GO:0000155|GO:0007165
Mtr1g0312 389 Pfam His Kinase A (phospho-acceptor) domain 326 389 IPR003661 GO:0000155|GO:0007165
Mtr1g0312 389 Coils Coil 295 315 - -
Mtr1g0312 389 Coils Coil 130 161 - -
Mtr1g0312 389 SMART HisKA_10 324 389 IPR003661 GO:0000155|GO:0007165
Mtr1g0312 389 Gene3D PAS domain 165 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0312 Mtr-Chr1 3547113 3549981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0312 2 389 Histidine Kinase Gene Family AT5G10720 63.520 6.87e-165 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0312 - - mtr:MTR_1g014670 757.288