Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0311 ATGGTTTGTGAGATGGAGAGTGATTGTATTGAAGACATGATGGACATTGAAGAGTTATCTTCAATGTGGCCAGAAGATGTTGGAACTGATGTTGGAAAACAATTCAACATAGAAAAACCAGGAAGAGATCAAGATATGTTGGAAGAAGTAACAATCTTAGAAGAACCAGCAATAGCTGATTTTCAAAGATTAATGGAGCTTACAAATTATACAGATAAAGGGTCATCTCAATTGGCTTATTTAATGCAACATTGGGAGTATAAGCAAGCGAACGCGGTTCGGCTTCTTCGAGAAGAGCTTGACAATCTTAGCAAACAAAGGAAGGAAGTTGAGCAAAGAAAATTGGAGATACTTAAAGAGAATAATCGATTCGAGGAAGAGATTAGTTATGGCGGAGACAAACGTCCGGTTTCAATATTGGACGATGCTTACTATACTTGGCAAGATCTACCGGCGGCGATAAGGAAAAGTGATATTGTTGTTCAGAACAAGAGAATTGAAATTGAGGCTGAGTATGATACTGTTGTTTACTGGAAACAACGGTCGCAAGATTTTGAAAAACAGTTGGAAGCTAGTATTCGGAGGGAGGATATATTAAAGGAGAAATTGCAAGAAAGTATAGAGACTATTGAAAGACAATCATCACCTGTGGAGGAACTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGTTTTATCTATAATCATTTTCCAAGTTTACAAGAAGAGGACATTATAGGAAAAACAGATGTCGAAATTTTCACGGGAGCAGGTGTGAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAGTACCTGCAAAAAAGGAAATAACTTTTGAGACAGAACTATTTGGATTTAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAGGCAGGTGAAACAATTGGAGTAAACTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCAAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACAATGAGAGCAAAACAAATGTTGGCAACAATGTCTCATGAGATAAGATCACCGCTTTCTGGTGTTGTTAGCATGGCTGAAATTCTTACGACAACAAAACTTGATAAAGAGCAAAGACAGCTTTTGGATGTCATGTTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGATATACTTGATCTTTCCAAGGTCGAGTCAGGAGCTATGAAATTGGAAGCTACAAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAGCACCATTGCAGAAAATGCTAACACTGGAAGGAAATGTAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCTGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTATGTTGTTCCAGAACCAGCATTTGCCAAAGAAGAAGAATCTCACCAAAAGGTCACAGAAGACCAGTCAACTATTTCAGCAAATGGATTGAAGGAAGATAAACATACACCATCACCAAGAAGTATGAGATGTGATCAAAATCTTATCGATGATAGAAAACACGCTGACCATCCTATCCAGAATCATGCGTTTAGCAATGAATGCAGATCTTCAGTTAACAGTGAATGCTCAATGAATGATGATGATACTGAAGAACAAACTCATTCAATTGAAACAACAGTGTGGATACGTTGTGATGTGTACGACACAGGAATTGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTTAGTGCAGACCATGCTCGAAAATATGGAGGCACAGGTCTAGGACTAGCAATATGTAAACAACTGGTTGAGTTAATGGGGGGTCGTCTAACAGTGACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAGGTTTCAACAGCTTGTGAAAATTCTGATGATCCAGATGATCTTTCGGATGTCGATAATAACGAAGATGACACAACTGAGGGATTCTTCCAATTCCAACCACGAACTTTGGGCTCGCTTTTCACTTCTAATGGATCCACCAGGCCACACAGAATCTCACACAAGTTCAATGGTTTTCCGGACAACGATTCTTACTCAAACCATTCTAGTAACATCATTTCAAATGGAACAAATTCAATTGAGGATGCATCTTCTGTTATTGTTGATGCTTCAGATATGTCAGAATCAACAAATTCGTTTAGTCACAGCCTAGAAACTAAGCATGAAAGTTTATGTAATGGAAACAAACAAAACCATGATAATAATAAGGCACATGATAGGTTACAAAATGGTAGTGCAAACTCTATCCATTGGAAGGAAGCAAGTAGAGAAATGAATTTAGAAACAAAGTCAAATGAACCACAACAAACATGTCAGGGTCAAGGGAAGGAAGATAGTACTACTAGCAATAGCACATCATCAGAAGTAACCAAATCGACGTTAAAGCCGAATATTCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACAAAGTCAATGATGAAGCAGCTAGGATATAGCATGGATGTCGTGAATAATGGAGTGGAAGCCATACGCGCAGTTCAGAGCCATTCTTACGACATTATTTTGATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATCAGGTCTTATGAGGAAACAGGCAATTGGGATGCTGCAAGAGAAGCTGGAGTTGAACAAAGTTTATCAGCTTCGGATGAATGTTCTGTGCCACCTAAAAAGCGCATCCACATTGTTGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAAGAATGTTTCGCCAACGGTATGGACGCATTTGTGTCAAAACCAGTGACATTCCTAAAATTGAAAGAGTGTCTTGAAAAGTATCTAAGCTGA 3039 0.3814 MVCEMESDCIEDMMDIEELSSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVEQRKLEILKENNRFEEEISYGGDKRPVSILDDAYYTWQDLPAAIRKSDIVVQNKRIEIEAEYDTVVYWKQRSQDFEKQLEASIRREDILKEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQDFKREVMEKGVPAKKEITFETELFGFKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILTTTKLDKEQRQLLDVMLSSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAAPLQKMLTLEGNVADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPAFAKEEESHQKVTEDQSTISANGLKEDKHTPSPRSMRCDQNLIDDRKHADHPIQNHAFSNECRSSVNSECSMNDDDTEEQTHSIETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTACENSDDPDDLSDVDNNEDDTTEGFFQFQPRTLGSLFTSNGSTRPHRISHKFNGFPDNDSYSNHSSNIISNGTNSIEDASSVIVDASDMSESTNSFSHSLETKHESLCNGNKQNHDNNKAHDRLQNGSANSIHWKEASREMNLETKSNEPQQTCQGQGKEDSTTSNSTSSEVTKSTLKPNILLVEDNKINIMVTKSMMKQLGYSMDVVNNGVEAIRAVQSHSYDIILMDVYMPVMNGLQTTKLIRSYEETGNWDAAREAGVEQSLSASDECSVPPKKRIHIVAMTANTMSESAEECFANGMDAFVSKPVTFLKLKECLEKYLS* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0311 1012 Gene3D PAS domain 217 353 - -
Mtr1g0311 1012 SUPERFAMILY CheY-like 868 1012 IPR011006 -
Mtr1g0311 1012 Coils Coil 93 128 - -
Mtr1g0311 1012 SMART REC_2 868 1007 IPR001789 GO:0000160
Mtr1g0311 1012 Gene3D - 364 441 - -
Mtr1g0311 1012 Pfam Response regulator receiver domain 870 938 IPR001789 GO:0000160
Mtr1g0311 1012 Gene3D - 442 691 IPR036890 -
Mtr1g0311 1012 MobiDBLite consensus disorder prediction 779 803 - -
Mtr1g0311 1012 MobiDBLite consensus disorder prediction 779 818 - -
Mtr1g0311 1012 ProSiteProfiles Histidine kinase domain profile. 383 687 IPR005467 -
Mtr1g0311 1012 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 459 684 IPR036890 -
Mtr1g0311 1012 SMART HKATPase_4 487 687 IPR003594 -
Mtr1g0311 1012 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1011 - -
Mtr1g0311 1012 Coils Coil 193 213 - -
Mtr1g0311 1012 CDD HisKA 375 437 IPR003661 GO:0000155|GO:0007165
Mtr1g0311 1012 MobiDBLite consensus disorder prediction 830 864 - -
Mtr1g0311 1012 MobiDBLite consensus disorder prediction 527 558 - -
Mtr1g0311 1012 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 487 685 IPR003594 -
Mtr1g0311 1012 Coils Coil 347 367 - -
Mtr1g0311 1012 CDD REC_hyHK_CKI1_RcsC-like 870 1007 - -
Mtr1g0311 1012 SMART HisKA_10 376 441 IPR003661 GO:0000155|GO:0007165
Mtr1g0311 1012 ProSiteProfiles Response regulatory domain profile. 869 1011 IPR001789 GO:0000160
Mtr1g0311 1012 CDD HATPase_EvgS-ArcB-TorS-like 492 684 - -
Mtr1g0311 1012 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1011 - -
Mtr1g0311 1012 Pfam His Kinase A (phospho-acceptor) domain 378 441 IPR003661 GO:0000155|GO:0007165
Mtr1g0311 1012 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 375 441 IPR036097 GO:0000155|GO:0007165
Mtr1g0311 1012 PRINTS Bacterial sensor protein C-terminal signature 612 626 IPR004358 GO:0016310|GO:0016772
Mtr1g0311 1012 PRINTS Bacterial sensor protein C-terminal signature 647 665 IPR004358 GO:0016310|GO:0016772
Mtr1g0311 1012 PRINTS Bacterial sensor protein C-terminal signature 671 684 IPR004358 GO:0016310|GO:0016772
Mtr1g0311 1012 MobiDBLite consensus disorder prediction 833 864 - -
Mtr1g0311 1012 Gene3D - 861 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0311 Mtr-Chr1 3519736 3525295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0311 1 548 Histidine Kinase Gene Family AT5G10720 67.273 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g0311 HATPase_c 3.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0311 - - cam:101512841 1737.62