Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0307 ATGGCTACTAAGCTCTGTGATTCTTGCAAGTCAACAAAGGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTCTGTCTAACCTGTGATTCAAACATCCATGCCGCCAACAAACTCGCCTCCCGCCACCACCGTGTCACACTCTGCCAAGTTTGTGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGTTCTATGTATCTCCTGTGATCATGATATCCACTCTGCTAACCCCCTAGCTCGTCGCCACGAACGTGTCCCCCTCACCACCACCTTCAACCACCAGAACAGCCAGCAACAATCATTCTTCTCTGAAAATGATCACGACGCCACCACGGAAGAAGCAGAAGCTGCTTCCTGGCTTCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATCGATGATTTCGTCACTGTCAACACTAAAACAGACTTGCCAGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCTCATAGCAAAACCGCCACCGAACACGAACATGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTTCAATCACACCGTATCTTCACCGTCGATGGATGTTGGAGTTGTGCCGGACGGAAACGTGATGACGGAGATATCGTACTGCAGTTACCAAACAACGGCGACGGAGACGGCGCCGATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTATGAGGTACAGAGAGAAGAGAAAGAATAGAAGATTCGAGAAGACTATTCGCTACGCTTCGAGAAAAGCTTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTTGCGAAACGATCAGATTTAAATATGAATTTAATTGCAGAGGATGAATACGGCGTCGTTCCTTCCTGTTGA 951 0.4848 MATKLCDSCKSTKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAVLCISCDHDIHSANPLARRHERVPLTTTFNHQNSQQQSFFSENDHDATTEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVNTKTDLPEQNSPGTTADGVVPVQSHSKTATEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMDVGVVPDGNVMTEISYCSYQTTATETAPMTVAVPMTAVEREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0307 316 ProSiteProfiles CCT domain profile. 255 297 IPR010402 GO:0005515
Mtr1g0307 316 MobiDBLite consensus disorder prediction 160 187 - -
Mtr1g0307 316 Pfam CCT motif 255 297 IPR010402 GO:0005515
Mtr1g0307 316 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Mtr1g0307 316 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 315 - -
Mtr1g0307 316 CDD Bbox1_BBX-like 5 48 - -
Mtr1g0307 316 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 315 IPR045281 GO:0009909
Mtr1g0307 316 SMART bboxneu5 49 91 IPR000315 GO:0008270
Mtr1g0307 316 SMART bboxneu5 1 48 IPR000315 GO:0008270
Mtr1g0307 316 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Mtr1g0307 316 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Mtr1g0307 316 MobiDBLite consensus disorder prediction 160 178 - -
Mtr1g0307 316 CDD Bbox1_BBX-like 48 91 - -
Mtr1g0307 316 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0307 Mtr-Chr1 3491268 3492702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0307 1 301 C2C2-CO-like Transcription Factor Family AT5G24930 52.857 8.56e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr1g0307 zf-B_box 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0307 - - mtr:MTR_1g013450 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0307 1 3491268 3492702 Mtr1g0307 1 3491268 3492702 ECH