Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0298 ATGGAATCAACATGCGTGGATACTTCACTCAATCTTAACGTTAATGCTTCTTCTATACTCAAGGACGAAGTTTTGGTTGAAGAGTTACATCGTCTTAGTTCTGAAAACAAGAGGCTAAATGAAACATTGACCAACATGTGTGAGAACTATGACACTATGCAAAAGCAATTGAATCAATTGATGAATCAAAATTTTGAAAACCAAACACAACAATCAAGGAAAAGAAAAGCTGAGAGTGAGAGTTGCATCAATATGTTTGGTACTGTTAGAGGCATTAATATTATTAATAATAATAATGAGTGCAGCACTGTTACTGATGAAGAATCATTAATCAAAAGGCCATGTAGGGATATTTCATCACCTAAGGCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTATATGTGATGGATGGATATCAATGGAGGAAATATGGTCAGAAGGTTACTAGAGATAACCCCTCTCCTAGAGCTTATTTTAGGTGCTCATATGCTCCAAGCTGCCCAGTTAAAAAGAAGGTGCAAAAAAGTGTAGAAGACCCTACTATACTAGTTGCAACATATGAAGGAGAGCACAACCATGGTCATGAGAAAGCTGAAATATCAATGATATCAAGCCAAAGTGAAGAAGCTCCTTTAGGTTCAGTTCATGTTACTTCACCTCAACAAATTATTCAAAGAACATGTTCAACCATGAAGCTTGATAATGTTCCAAAATCATCTATCCAGCAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAATGATCCTAATTTCACTGCAGCACTTGCCACTGCTATTTCTGGAAGAATTTTGGACCATACTTCTAATAAGGACAAATGGTGA 858 0.3601 MESTCVDTSLNLNVNASSILKDEVLVEELHRLSSENKRLNETLTNMCENYDTMQKQLNQLMNQNFENQTQQSRKRKAESESCINMFGTVRGINIINNNNECSTVTDEESLIKRPCRDISSPKAYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSYAPSCPVKKKVQKSVEDPTILVATYEGEHNHGHEKAEISMISSQSEEAPLGSVHVTSPQQIIQRTCSTMKLDNVPKSSIQQFLVQQMATSLTNDPNFTAALATAISGRILDHTSNKDKW* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0298 285 Gene3D WRKY domain 123 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g0298 285 Coils Coil 29 63 - -
Mtr1g0298 285 ProSiteProfiles WRKY domain profile. 134 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0298 285 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 279 IPR044810 GO:0003700
Mtr1g0298 285 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 279 - -
Mtr1g0298 285 SUPERFAMILY WRKY DNA-binding domain 136 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g0298 285 Pfam WRKY DNA -binding domain 141 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0298 285 SMART WRKY_cls 139 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0298 Mtr-Chr1 3328783 3330738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0298 3 275 WRKY Transcription Factor Family AT1G80840 42.809 1.42e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr1g0298 WRKY 1.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0298 - - gmx:100810978 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0298 1 3328783 3330738 Mtr3g3859 3 52375621 52379872 PCT