Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0297 ATGGCTATTAGAATGGATGAAAAGGTGGAAACTCTTGAATTAGAGTTACAACAAGTGAGAGAGGAGAACAATACTCTAAGATTCATGCTTGAAGTTATGAGTATAAAGTGTACAAAGCTTGAATCTCATCTTCAAGATATCAAAAAGGAAGAACATAGGGGAATCATAAGTTCAAATCATCAAATTGAGTCAATACCTAACATTGATTCAAGCAAAAGAGCAAGACTAGAGTTTCCCACAGCACAAAAGCCTCTACAAGTCTTTGTACGAACTCAACCTAATGATGAAAGTTTGATAATAAAAGATGGCTATCAATGGAGGAAGTATGGTCAAAAGGTTACCAAAGACAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCCATGGCTCCTAGTTGCCCAGCAAAAAAGAAGGTGCAAAAATGCATACATGATAGGTCTATCCTTGTTGCAACATATGATGGAGAGCACAGCCATGGTGTCCCTAATGAGTCATTTAAACCATCTTCATCCACACCTAAAGGTTCATCAATATCTAATAAATTACCAACAAGATTAAGTGACAAAGAAGCCATAAGCACCAGAATTTGTGAGAATGTCATGCAACAGTTTGGCGTTGAAAGGCACATTAAAATTGAAGAATATGCAAGTTCCCTAATCAAAGATCCTGACTTCACTGCAGCATTAGCTGAAGCAGTTGCTCGAACCATCACTGATCAAGAACATAAGCGACAAGGTCTAGATCTCAATTTGAATCTTTCAGAAGAGTGA 768 0.3763 MAIRMDEKVETLELELQQVREENNTLRFMLEVMSIKCTKLESHLQDIKKEEHRGIISSNHQIESIPNIDSSKRARLEFPTAQKPLQVFVRTQPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCIHDRSILVATYDGEHSHGVPNESFKPSSSTPKGSSISNKLPTRLSDKEAISTRICENVMQQFGVERHIKIEEYASSLIKDPDFTAALAEAVARTITDQEHKRQGLDLNLNLSEE* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0297 255 Coils Coil 2 29 - -
Mtr1g0297 255 Pfam WRKY DNA -binding domain 101 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0297 255 SMART WRKY_cls 100 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0297 255 ProSiteProfiles WRKY domain profile. 95 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0297 255 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 236 IPR044810 GO:0003700
Mtr1g0297 255 MobiDBLite consensus disorder prediction 162 181 - -
Mtr1g0297 255 Gene3D WRKY domain 86 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g0297 255 PANTHER WRKY TRANSCRIPTION FACTOR 49 5 236 - -
Mtr1g0297 255 SUPERFAMILY WRKY DNA-binding domain 96 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g0297 255 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0297 Mtr-Chr1 3315765 3317601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0297 72 241 WRKY Transcription Factor Family AT1G80840 42.623 4.11e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr1g0297 WRKY 6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0297 - - mtr:MTR_1g013790 495.352