Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0271 ATGGCAAACTATCACCGGAACAACGTCGGAAACCTCGTTCTCGGCCACCGCCACCGCCACCACCACTCTTCGAAACCACCAACATTCTCCCACCACTTCCGTCTCTGGAACTCCCTTTCCATTGCTTCTCTCCGTCGTCTCATCTTCCACGCCGTCAGCTGCGGTGGCGCCACCTCCCGTTATAATCACCGCCGCCGTAGCACTTTCAACGAAGATGACACTGAAGACTTCTCTTCATCAGCAGCTTCTTCCTTCGACAAACGACAACAGACTCAAACTTCAAAACCGAATGTGAAATCGGAGAAACTCTCCGATCTTCTTAACATGGCGGAGATAGAGACGGAAGAGGAAGCAAAGAAGAAGGAAGAAGCTCTAGAGAAACTTAAGAGACTTGTGAAGGATTTGCATGAGGAAGATGATTCGGTGAAGCGGCGTGAAGCTGCGACCACCGTGAGAATGCTCGCTAAGGAGAATTTGGAAGTCAGAGGAACACTTTCGATGCTCGGAGCTATTCCACCATTAGTCGCAATGCTCGATTCAAAAGACGTTGATTCTCAGATCGCTTCTCTCTACGCTTTGCTCAATCTCGGAATCGGAAACGATACAAATAAAGCAGCCATTGTTAAAGTTGGTTCTGTACACAAGATGCTTAAGCTTATTGAATCTTCAGATGGTATTGATTCAGCGGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCGTTGGATTCGAATAAACCAATTATTGGGTCTTCGGCTGCAATACCCTTTTTAGTTAGAACTCTTCAGAATAAGAATTTAGATAAGCAAAGTAGTAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATCTTCCCAGCCAATGTTCAGTTTATTTTGGAAACTGATTTGGTACTGTTTCTGATAAACTCGATTGGCGACATGGGAGTAACTGAAAGAAACCTTTCAATCCTTAGCAATTTGGTATCAACTAGAGCAGGTAGAAAGGCGATAAGTGCTGTCCCGGATGTGTTCCCTATCTTGGTCGATGTATTGAATTGGAATGATTCACCTGAATGCCAGGAAAAGGTTTCGTATATTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATAGAGGCAGGGATTGTGTCGTCGCTTCTTGAGTTGTCGCTTATTGGTACTACTTTGACTCAGAAACGGGCATCAAGGCTATTGGAAAGTTTGAGAATAGATAAAGGGAAACAGGTTTCAGGGAACTATAACGGAAATTTAGGCGCAACTGTTTCTGCCCCAATTTGCGGAACTTCATCGTCGTGTGCAAAACCAGATGGAGGTGGAGGAGGAAAAGATTGTTCGGAAGAAGATGAAGATATGATGAGCGAAGAGAAGAAAGCAGTGAAGCAATTAGTCCAATTAAGTTTGCAAAACAACATGAGGAAAATTGTGAAGAGGGCCAACTTGCCTCAAGATATAGTCCCATCAGATCATTTTAAGTCACTCACTTCAAGTTCAACTTCTAAGAGTTTACCATTCTGA 1548 0.4348 MANYHRNNVGNLVLGHRHRHHHSSKPPTFSHHFRLWNSLSIASLRRLIFHAVSCGGATSRYNHRRRSTFNEDDTEDFSSSAASSFDKRQQTQTSKPNVKSEKLSDLLNMAEIETEEEAKKKEEALEKLKRLVKDLHEEDDSVKRREAATTVRMLAKENLEVRGTLSMLGAIPPLVAMLDSKDVDSQIASLYALLNLGIGNDTNKAAIVKVGSVHKMLKLIESSDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLQNKNLDKQSSNQVKQDALRALYNLSIFPANVQFILETDLVLFLINSIGDMGVTERNLSILSNLVSTRAGRKAISAVPDVFPILVDVLNWNDSPECQEKVSYILMVMSHKSYGDKQAMIEAGIVSSLLELSLIGTTLTQKRASRLLESLRIDKGKQVSGNYNGNLGATVSAPICGTSSSCAKPDGGGGGKDCSEEDEDMMSEEKKAVKQLVQLSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0271 515 Coils Coil 107 145 - -
Mtr1g0271 515 MobiDBLite consensus disorder prediction 442 466 - -
Mtr1g0271 515 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 515 - -
Mtr1g0271 515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 169 211 IPR000225 GO:0005515
Mtr1g0271 515 MobiDBLite consensus disorder prediction 451 466 - -
Mtr1g0271 515 Gene3D - 271 423 IPR011989 -
Mtr1g0271 515 SUPERFAMILY ARM repeat 96 415 IPR016024 -
Mtr1g0271 515 MobiDBLite consensus disorder prediction 74 100 - -
Mtr1g0271 515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 289 IPR000225 GO:0005515
Mtr1g0271 515 MobiDBLite consensus disorder prediction 65 100 - -
Mtr1g0271 515 Pfam Armadillo/beta-catenin-like repeat 167 196 IPR000225 GO:0005515
Mtr1g0271 515 MobiDBLite consensus disorder prediction 496 515 - -
Mtr1g0271 515 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 515 - -
Mtr1g0271 515 SMART arm_5 373 414 IPR000225 GO:0005515
Mtr1g0271 515 SMART arm_5 200 243 IPR000225 GO:0005515
Mtr1g0271 515 SMART arm_5 244 290 IPR000225 GO:0005515
Mtr1g0271 515 SMART arm_5 158 198 IPR000225 GO:0005515
Mtr1g0271 515 MobiDBLite consensus disorder prediction 499 515 - -
Mtr1g0271 515 Gene3D - 99 270 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0271 Mtr-Chr1 3029611 3032023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0271 125 419 U-box Gene Family AT1G67530 29.801 9.88e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0271 - - mtr:MTR_1g014420 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0271 1 3029611 3032023 Mtr3g3864 3 52450631 52453239 PCT