Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0267 ATGAATTTTTCAAATTTAATCTATGTTCAGAAAATGAGTAGCTTGGTTGACAGGCTTCGTGTAAGATCTGATCGAAAGCAATTTAATACTCAAGATGAGTCAGACGATGATGCTGATTTAATGCCCAGAAAAAGTCAGACAACTCTGGAAAAGTTTGAGAGGATTGTAAGAAGCGATGCAAAAAAGGATTCATGCCAAGCTTGTGGAAAGAGCGGAAATCTTAGGAGCTGTAAAACATGCACTTATTCGTTCCACACCGAGTGTTTACTGTCACCACTTAAAAGCTCCCGTCTTGACAACTGGATGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGATGCGTCCCACTGTTGCCGGCGAAAGTGATGCCGAAAATTTGAGGTCCAAACAAAGTTTGACGAAACAATATCTTGTGAAGTGGAAAGGACTATCGTATATGCATTGCGGATGGGTGCCAGAGGAAGAGTTTCTGAAGGTTTTCAGGATTAATCAACATTTAAAGACCAAAGTAAACAACTTTCATCGTAAAATGGGACCAGTCAGAAAACCAGATGAAGATTTTGTTGCCATTCGACCTGAATGGACTACGGTTCACCGAATACTTTCTTGCAGGGACCATGGTGCTGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCTTATGATGAATGCCATTGGGAGCTTGAGTCAGATATCTCTTTGTTTCAGGCAGAAATAGAGAGATTCAATATATTTCGTTCTAGGTCTAGGAAGATTTCTTATTGTAAGCAAAAAGGCAGTGTTAGTGATGATGCTGAATTGATAAAGCAGCAGAAAGAATTTCAACAGTATGAACATAGCCCCGAATTTCTTTCAGGGGGTACACTACATCTGTATCAACTTGAGGGATTGAACTTCCTACGTTTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACTATACAAAGTATTGCTTTCTTAGCATCCCTTTTACAAGAGAATGCTTCTCCACATTTGGTGGTTGCTCCACTTTCTACACTACGAAACTGGGAGCGCGAATTTGAAAGATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGAACTTCCCAAGCTCGTAGCACTATTAGAGAATATGAATTTTACTTTCTGAAGAATCCGAAGAAGAGCAAGAAAAAGAATTCTAAAAAAACAGTTACTACAAGAAAGTTGGAAAGCATTAAATTTGATGTTCTTTTGACTTCATATGAGATTATAATCCAAGATACCGCATCATTGAAGCCGATAAAGTGGGAGTGCATGATAGTCGATGAAGGTCACCGTCTGAAAAACAAGGATTCAAAATTGTTTTCTTCACTGAAGCAATACTCTAGCAGACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTCTTTATGCTTATGCACTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAAGAGTTCCAAGAAGAATTTAAGGATATCAATCAAGAGCAACAGGTTTCGAGGCTTCATACATTGTTGGCCCCACATCTCCTGCGAAGATTGAAGAAGGATGTTATGACTGAACTACCTCCTAAAAAGGAGCTTATTATACGTGTTGAATTGAGCAGCAAACAGAGAGAATATTATAAGGCAATTTTGACTCGTAATTATGACATATTAACTCGCCGTGGTGGAGCACAAATTTCTCTTAACAATGTTGTTATGCAACTGCGTAAGCTATGTTGTCATCCTTACATGTTGGAAGGAGTTGAGCCAGTTCTGCACAAAGAAACAGAAGCATATAAACAAATGCTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGCTGATGATGAAGCTTAAAGAGCAAGGGCATAGAGTCCTTATATTTTCTCAATTTCAGGGCATTCTGAACATGCTTGAAAGTTATTGTGTTTACAAGCATTGGCAGTATGAAAGGATAGATGGAAATGTTGATGGAGATGAACGACAAGTACGGATAGACCGATTTAATGCTGAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGTGGGTTGGGGATAAACCTTGCAACGGCAGACACAGTTATTATATATGATAGTGATTGGAACCCTCATGCTGATCTACAGGCTATGGCCAGAGCTCATCGAGTTGGACAAACTAACAAGGTGTTGATTTTTAGGCTTATAACACGTGGAACAATTGAAGAAAGGATGATGGAAATAACTAAGAAGAAGATGGTGTTAGAACACGTAGTCGTAGGCAGAAAGGCTCAAAACATTAAACAGGAAGAGTTGGACGACATCATCAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGACGTGGCCGGAAAATCTCGCCAAATTCATTACGACGATGCCGCTATTGACAGATTGTTGGGTCGCGACCAAGTTGGAGCTGAAGAGGCCACTTTGAATGATGAAGATGAAAGTGGATTTCTGAAAGCCTTTAAGGTGGCAAATTTTGAATTCATTGATAAAGGTGAGGCTTCAGAAGGAAAAAACTTTTGGGAGGAATTGCTTAAAGATAAATACCAAGAGCAAAAAGTTGAAGTGCAAAATGCCTTGGGTAAAGGGAAGCGAAACCGCACAACTTTACTGGGGGAGAATTTTGCTCGGCTAGAAGGTGTAGGCTCCTCCGACTACGAGGATGACGATTATGAAGTGGATCATACCGACGGTGATTCAAATTCAACAAGAACTACTACATCCAAAAGACCTTCCAAAAAGACAGCTCCTGCAGATAACACAAATCCACCGGCTTTAATGGAAGGCGAAGGAAAATCACTAAAAGTGATAGGTTTTACTCAACGTCAGAGAGCTGCTTTCCTTCAGCTTTTAATGAGGTTTGGGGTCGGCGATTTTGATTGGAAGGATTTTATTCCCCACATGAAGCAGAAGACTTGTGAAGAAATCAACGAGTATGGAGCCCTTTTCTTGTCTCATATTGCTGAAGATATAAATGATTCCCCTGCATTCTCAGATGGTGTTCCAAAAGAAGGACTTCAAATAGTTGAAGTACTTGTTAGAATATCGGTTTTGTCATTGATAAGGGAAAAGGTGAAGTTTGCATCAGAAAATCCCGGCACTCCACTTTTTTCAGATGACATCTTGTCACGATATGCAGGCTTGAGAAGTACAAAGATATGGAAGGAGGAGCATGATTTAGTCTTGCTGCATGCAGTTTTGAAGCATGGATATGGAAAGTGGCATGATATTGTTGATGATAAGGATCTGAATATTCAAAGAGTCATCTGTCAGGAGTTAAGTACCCCCTTCATAAATTTACCATCGCTAGGACAAGTTGGTTCTCAAGTGAAAAATGGTGCAAATATGACAAATGTGGAATCCCCATCGAACCAGTCTAGGGAGAATAATGGTAGTGCCGCAGCAGTTAATGGAGCACATGGCTCTTATGATGCTAGGAGCCAAGAACCGTTGTATCAACTCTCCGATCTATTATTGCAATTTAGAAACATGCAGAGAAGACAAATTGATTTCATAAGAAAGAGGTTTCCTCTCTTGGAAAATTGTCTCAATGATGAATACTGCCAGAAAGAATACTCTGACAAGATGGAAGCAACGGCGGGGACCTATCAAGAAACTCGAAATGAATCTACTCAAACCCCAACGATTTATCAACTGCCTCAAGTTGAAAAAATAAGTATGAATTTGCATCTCTGA 3753 0.3981 MNFSNLIYVQKMSSLVDRLRVRSDRKQFNTQDESDDDADLMPRKSQTTLEKFERIVRSDAKKDSCQACGKSGNLRSCKTCTYSFHTECLLSPLKSSRLDNWMCPECVSPLNDIDKILDCEMRPTVAGESDAENLRSKQSLTKQYLVKWKGLSYMHCGWVPEEEFLKVFRINQHLKTKVNNFHRKMGPVRKPDEDFVAIRPEWTTVHRILSCRDHGAEKEYLVKWKELPYDECHWELESDISLFQAEIERFNIFRSRSRKISYCKQKGSVSDDAELIKQQKEFQQYEHSPEFLSGGTLHLYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLLQENASPHLVVAPLSTLRNWEREFERWAPQMNVVMYVGTSQARSTIREYEFYFLKNPKKSKKKNSKKTVTTRKLESIKFDVLLTSYEIIIQDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEQQVSRLHTLLAPHLLRRLKKDVMTELPPKKELIIRVELSSKQREYYKAILTRNYDILTRRGGAQISLNNVVMQLRKLCCHPYMLEGVEPVLHKETEAYKQMLESSGKLQLLDKLMMKLKEQGHRVLIFSQFQGILNMLESYCVYKHWQYERIDGNVDGDERQVRIDRFNAEDSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRVGQTNKVLIFRLITRGTIEERMMEITKKKMVLEHVVVGRKAQNIKQEELDDIIRYGSKELFADENDVAGKSRQIHYDDAAIDRLLGRDQVGAEEATLNDEDESGFLKAFKVANFEFIDKGEASEGKNFWEELLKDKYQEQKVEVQNALGKGKRNRTTLLGENFARLEGVGSSDYEDDDYEVDHTDGDSNSTRTTTSKRPSKKTAPADNTNPPALMEGEGKSLKVIGFTQRQRAAFLQLLMRFGVGDFDWKDFIPHMKQKTCEEINEYGALFLSHIAEDINDSPAFSDGVPKEGLQIVEVLVRISVLSLIREKVKFASENPGTPLFSDDILSRYAGLRSTKIWKEEHDLVLLHAVLKHGYGKWHDIVDDKDLNIQRVICQELSTPFINLPSLGQVGSQVKNGANMTNVESPSNQSRENNGSAAAVNGAHGSYDARSQEPLYQLSDLLLQFRNMQRRQIDFIRKRFPLLENCLNDEYCQKEYSDKMEATAGTYQETRNESTQTPTIYQLPQVEKISMNLHL* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0267 1250 ProSiteProfiles Chromo and chromo shadow domain profile. 111 193 IPR000953 -
Mtr1g0267 1250 CDD CD1_tandem 109 183 - -
Mtr1g0267 1250 MobiDBLite consensus disorder prediction 1132 1159 - -
Mtr1g0267 1250 MobiDBLite consensus disorder prediction 1132 1155 - -
Mtr1g0267 1250 Gene3D - 540 764 IPR027417 -
Mtr1g0267 1250 Pfam CHD subfamily II, SANT-like domain 925 1058 IPR009462 GO:0003677|GO:0006338
Mtr1g0267 1250 Pfam Helicase conserved C-terminal domain 620 733 IPR001650 -
Mtr1g0267 1250 SMART PHD_3 64 107 IPR001965 -
Mtr1g0267 1250 SUPERFAMILY Chromo domain-like 77 186 IPR016197 -
Mtr1g0267 1250 SMART chromo_7 201 255 IPR000953 -
Mtr1g0267 1250 SMART chromo_7 110 179 IPR000953 -
Mtr1g0267 1250 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 16 1046 - -
Mtr1g0267 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 788 IPR027417 -
Mtr1g0267 1250 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 623 783 IPR001650 -
Mtr1g0267 1250 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 309 495 IPR014001 -
Mtr1g0267 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 530 IPR027417 -
Mtr1g0267 1250 SMART ultradead3 293 506 IPR014001 -
Mtr1g0267 1250 ProSiteProfiles Chromo and chromo shadow domain profile. 203 250 IPR000953 -
Mtr1g0267 1250 MobiDBLite consensus disorder prediction 905 948 - -
Mtr1g0267 1250 CDD CD2_tandem 201 250 - -
Mtr1g0267 1250 SUPERFAMILY Chromo domain-like 193 251 IPR016197 -
Mtr1g0267 1250 Pfam Chromo (CHRromatin Organisation MOdifier) domain 204 251 IPR023780 -
Mtr1g0267 1250 Pfam Chromo (CHRromatin Organisation MOdifier) domain 114 167 IPR023780 -
Mtr1g0267 1250 Gene3D - 289 539 IPR038718 -
Mtr1g0267 1250 ProSiteProfiles Zinc finger PHD-type profile. 62 109 IPR019787 -
Mtr1g0267 1250 Gene3D - 1028 1187 - -
Mtr1g0267 1250 SMART DUF1086_2 906 1061 IPR009462 GO:0003677|GO:0006338
Mtr1g0267 1250 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 16 1046 - -
Mtr1g0267 1250 MobiDBLite consensus disorder prediction 919 938 - -
Mtr1g0267 1250 SMART helicmild6 649 733 IPR001650 -
Mtr1g0267 1250 Pfam SNF2-related domain 317 597 IPR000330 GO:0005524|GO:0140658
Mtr1g0267 1250 Gene3D - 111 185 - -
Mtr1g0267 1250 Pfam CHD subfamily II, DUF1087 852 887 IPR009463 -
Mtr1g0267 1250 CDD SF2_C_SNF 618 744 - -
Mtr1g0267 1250 Gene3D - 193 252 - -
Mtr1g0267 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 110 IPR013083 -
Mtr1g0267 1250 SMART DUF1087_2 834 899 IPR009463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0267 Mtr-Chr1 2950219 2966116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0267 319 793 RAD5 or RAD16-like Gene Family AT1G02670 25.225 2.72e-32 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g0267 SNF2_N 6.7e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0267 K11643 - gmx:100790230 1801.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0267 1 2950219 2966116 Mtr3g3867 3 52486820 52505938 PCT