Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0266 ATGGATATAATTCGCGATTGCATGTGGTGCCACCGTCTCAATGATGATGCACAATCTGATACTTCAGTTTGGTCTAAACCACAAACAGATTGGATCAAGTGTAACGTTGATTGTGCCCTTTTCGAAGCCGAAGGAAAATTTGGTGTTGGCATCTGTTTTCGAGATAGCCTTGGACATCTTATCCAAGCTAACTCTATGGTATTTCCTTCTTTTACAAATGCAGCTGAGTGTGAAGCTACCGCTATACAACAAGCCCTCCAAATTGCTCTTGAACTTGGCCTGAATCGGGACTTTGCTTTTACTAATGATAGCAAGAAAGGAAGGCTTATAATTACCAATATAATTCAGCTTTTTGGTCACGTTATTTCACTTTTCACTTTCACTCTCCATAGTTTCATGATGAATGATCAATTTCCTATTGGAATGCGTGTTCTTGCCGTCGATGATGATAGAACATGTCTCAAGATTTTGGAGAGACTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCAAAGTGCACTAACAGCATTGAACTTGTTGAGAGAAAACAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATCATGTTTTCTGCAAATGATGATCCAAAGATGGTGATGAAAGGAATTGATCATGGTGCTTGTGATTATCTGCTGAAACCTGTTACATTGAAGGAGGTACAAATGATTTGGCAACATGTAGTCAGGAAGAAGAAAACTAACAAAAGAAGCAATCGTGATGCGCCTAATTCTGATTGTGGAAATGGAATCGATTCAGCTCGGACAGGAAATTTCGATCAAAATGAAAAGCCATCTAGAAAAAGGAAGGAGAAGAATGAAGATGAGGATGAGGATGAGGATGAGGATGATCGTGACAATGATGATTCGACGGCACAGAAGAAGCCTCGAGTTGTTTGGTCGGCTGACTTACACCGCAAGTTTCTTGCTGCTGTTAAACAATTAGGCTTTGAAAAGGCTGTGCCAAAAAAGATACTTGACTTGATGGATGATGAAACCCTTACAAGGGAGAATGTGGCCAGCCATCTCCAGAAATACAGACTCTATCTGAAAAAACAAGCTAATATGGCAGAAGTTTTGGGTAATGATTCTGATAAATCCTATTCAAGAATGGGTTATATCAGTGGAGTTGGTGCTCATGTGCAGCCATTGAATGACCCTAGACAGTTTCATAATAATAACAGTGCTTTCAGATCCTTTCCATCTAGTGGTATGAGTACTAGATTGAACACTCCTTCTAGTAGTGTCAATATGCATGGATTTCCTGCACATAATTTGAACAACTCAACAGGGGATCATCTTAGGTTTCAATCGGCCATAGCTCGTTCCAATCTGAATGATGTTCAAAGAATGCCATTTTCTTCTGTAGACTCTCAACATTCACAGTTTTCTCATCCTTTACTTGAAAAAAGAAGGTGCAATGACATTTGGTCAAGCCCTATGCAGCAATTACCAGAAACAAACTCTTACCTTCCAAAAGAAGGTTTTGTCCATGCTGCTGCTATGCCTCCTACATATAACATGAATTCACAAGGTATTATTTTTAACAGTTCTAATAATGTGCCATTTCAAGGATGGGATAATAACCATAACAACCATGATGGAAGTTATCATCCTTCTCATGTGGTTGGTAATTCAGTAGGCCCTTCTATGATTCATGTTCTGAATGCTATTGAACCAGAAGGAAACTTGGACAATAATTATTGTGATCGTATCGCGGAGTTACATGAAGTTCCATCATTGAAACCACATGAGGTATATATGATGAATAATCAGATGAAGGCTGGAAATAGCCACATGTCTAATGAGCTTGATTCGCTTGAGGACGTCATGAGAGTCATGATCAAACCGAAACAATTATATGCCAATTTCTCTGGTGGGACATCAATGCCACGGCAAGATTAG 1992 0.3946 MDIIRDCMWCHRLNDDAQSDTSVWSKPQTDWIKCNVDCALFEAEGKFGVGICFRDSLGHLIQANSMVFPSFTNAAECEATAIQQALQIALELGLNRDFAFTNDSKKGRLIITNIIQLFGHVISLFTFTLHSFMMNDQFPIGMRVLAVDDDRTCLKILERLLQRCQYHVTTAQSALTALNLLRENKSNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPKMVMKGIDHGACDYLLKPVTLKEVQMIWQHVVRKKKTNKRSNRDAPNSDCGNGIDSARTGNFDQNEKPSRKRKEKNEDEDEDEDEDDRDNDDSTAQKKPRVVWSADLHRKFLAAVKQLGFEKAVPKKILDLMDDETLTRENVASHLQKYRLYLKKQANMAEVLGNDSDKSYSRMGYISGVGAHVQPLNDPRQFHNNNSAFRSFPSSGMSTRLNTPSSSVNMHGFPAHNLNNSTGDHLRFQSAIARSNLNDVQRMPFSSVDSQHSQFSHPLLEKRRCNDIWSSPMQQLPETNSYLPKEGFVHAAAMPPTYNMNSQGIIFNSSNNVPFQGWDNNHNNHDGSYHPSHVVGNSVGPSMIHVLNAIEPEGNLDNNYCDRIAELHEVPSLKPHEVYMMNNQMKAGNSHMSNELDSLEDVMRVMIKPKQLYANFSGGTSMPRQD* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0266 663 CDD REC_typeB_ARR-like 144 258 - -
Mtr1g0266 663 Pfam Response regulator receiver domain 144 250 IPR001789 GO:0000160
Mtr1g0266 663 SMART REC_2 142 254 IPR001789 GO:0000160
Mtr1g0266 663 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 324 377 IPR006447 GO:0003677
Mtr1g0266 663 MobiDBLite consensus disorder prediction 270 289 - -
Mtr1g0266 663 SUPERFAMILY Homeodomain-like 322 381 IPR009057 -
Mtr1g0266 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 132 645 - -
Mtr1g0266 663 Gene3D - 141 274 - -
Mtr1g0266 663 MobiDBLite consensus disorder prediction 259 324 - -
Mtr1g0266 663 Pfam Myb-like DNA-binding domain 326 376 IPR001005 -
Mtr1g0266 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 132 645 IPR045279 GO:0009736
Mtr1g0266 663 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 321 380 IPR017930 -
Mtr1g0266 663 SUPERFAMILY CheY-like 141 265 IPR011006 -
Mtr1g0266 663 Gene3D - 320 382 - -
Mtr1g0266 663 ProSiteProfiles Response regulatory domain profile. 143 258 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0266 Mtr-Chr1 2942692 2947214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0266 136 442 Response Regulator Gene Family AT2G25180 58.065 1.66e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr1g0266 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0266 - K14491 mtr:MTR_1g013180 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0266 1 2942692 2947214 Mtr3g3868 3 52511147 52515705 PCT