Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0264 ATGGGGCGTTATAATAATTTTTTCTATGAATTTGATGTCAAGATTTTGGAGAGGCTTCTCCAAAGGTGTCAATACCATGTAACCACTGCTCATAGTGCACTAACAGCACTGAACTTATTGAGAGAAAACAAAAGCAATTTTGACCTAGTAATCAGCAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGATTTACCTGTCATAATGTTTTCTGCAAATGATGATCCAAAGATGGTGATGAAAGGAATTGAACATGGTGCTTGTGATTATCTGGTGAAACCTGTTAGACTGAAAGAGGTACAGATCATTTGGCAGCATGTAATCAGGAAGAAGAAAACTCGAACTGTTTGGTCTGCTGATTTACACGGCAAGTTTGTTGCTGCTGTTAATCAATTAGGCGTTGACAAGGCTGTACCGAAAAAGATTCTTGAACTGATGAATGTTGAAAATCTGACAAGGGAGAAAGTTGCCAGCCATATCCAGAAGTATAGACTCTATCTAAAAAGAATTAGTTGTGCGGAAGACAAACAAGATCATATGGCAGCAGCCATAGCTAGTAGTTCAGATGCATCCTATCAACTCAACTGCCAATCTTTCCCAGTGACATTCTTTTCCCACCCCCCATACTTCTCACATATCTTTCATGATTTGTAA 681 0.3891 MGRYNNFFYEFDVKILERLLQRCQYHVTTAHSALTALNLLRENKSNFDLVISNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPKMVMKGIEHGACDYLVKPVRLKEVQIIWQHVIRKKKTRTVWSADLHGKFVAAVNQLGVDKAVPKKILELMNVENLTREKVASHIQKYRLYLKRISCAEDKQDHMAAAIASSSDASYQLNCQSFPVTFFSHPPYFSHIFHDL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0264 226 ProSiteProfiles Response regulatory domain profile. 1 117 IPR001789 GO:0000160
Mtr1g0264 226 SUPERFAMILY CheY-like 13 123 IPR011006 -
Mtr1g0264 226 SMART REC_2 9 113 IPR001789 GO:0000160
Mtr1g0264 226 Pfam Myb-like DNA-binding domain 124 173 IPR001005 -
Mtr1g0264 226 CDD REC_typeB_ARR-like 14 117 - -
Mtr1g0264 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 122 - -
Mtr1g0264 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 119 193 - -
Mtr1g0264 226 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 121 174 IPR006447 GO:0003677
Mtr1g0264 226 Pfam Response regulator receiver domain 14 109 IPR001789 GO:0000160
Mtr1g0264 226 Gene3D - 9 121 - -
Mtr1g0264 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 119 193 IPR045279 GO:0009736
Mtr1g0264 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 122 IPR045279 GO:0009736
Mtr1g0264 226 Gene3D - 122 180 - -
Mtr1g0264 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 177 IPR017930 -
Mtr1g0264 226 SUPERFAMILY Homeodomain-like 119 178 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0264 Mtr-Chr1 2927234 2930076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0264 13 224 Response Regulator Gene Family AT4G31920 50.000 1.32e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr1g0264 Response_reg 5.3e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0264 - K14491 ini:109166396 248.054