Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0262 ATGGAAAGACTAAGCAAAGAACCATGCATCTTCTCTTCTCAAGAAACTCCTCCAAGTCCAAGCACACCTTTGCAAAATCAACATGAAAAGAAGAAACAACAATCTATTGAGGTAGAAGAAGATATCACTAAGGTAGAAACTTTATTTGATCTAAATGTATCTAGCAATGATTCTAATCTCGATTGTAATAGTCAGCAAGAACCAGAACTTAATCTTATCACTTCTTTAGATGTTGGTAATTCATTATCACAAAACAATAATACTCTTGATGTAGAACAAAGAGTTTTTTCTTGTAACTATTGTCATAGAAAATTCTATAGCTCACAAGCATTAGGTGGACACCAAAATGCTCACAAAAGAGAGAGATCAATAGCAAAAAGAGGACAAAGATTTGGAACACAAATAATAGCTTCAGCTTCTGCTTTTGGATTTCCTATTTTGCATAATAAACAAAGTTATGCAAACATGGCTTCTTTACCTCTTTATGGTGCTTTTGGTAATAAACCTCTTGGAATTCAAGCACACTCTATGATCCATAAGCCTTCTCATGTTTCATCTAATGGATTTGGAAACTCTTATGGGCATCATCATCATCATGGTTGGTCAAACTCAAGAATCTTTATGGATCAACAACCTGGGATAGCAAAACTAGGTATAGCTGATTTTCATAGAACATCAACATCATCAAGAGGAAGTGTTGGTAGGTTTGAAGTGGTAGATACTATGATGAATTCTGCAGCTAATAAAGAAATGAAGCAGAAGCAACTTGATTTAAACCTCAAGCTATGA 789 0.3435 MERLSKEPCIFSSQETPPSPSTPLQNQHEKKKQQSIEVEEDITKVETLFDLNVSSNDSNLDCNSQQEPELNLITSLDVGNSLSQNNNTLDVEQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGQRFGTQIIASASAFGFPILHNKQSYANMASLPLYGAFGNKPLGIQAHSMIHKPSHVSSNGFGNSYGHHHHHGWSNSRIFMDQQPGIAKLGIADFHRTSTSSRGSVGRFEVVDTMMNSAANKEMKQKQLDLNLKL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0262 262 SUPERFAMILY beta-beta-alpha zinc fingers 92 123 IPR036236 -
Mtr1g0262 262 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 262 - -
Mtr1g0262 262 Gene3D Classic Zinc Finger 74 142 - -
Mtr1g0262 262 MobiDBLite consensus disorder prediction 9 29 - -
Mtr1g0262 262 MobiDBLite consensus disorder prediction 1 37 - -
Mtr1g0262 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 262 IPR044246 GO:0009788
Mtr1g0262 262 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Mtr1g0262 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0262 Mtr-Chr1 2906712 2907888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0262 49 262 C2H2 Transcription Factor Family AT5G10970 42.857 1.72e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0262 - - lja:Lj5g3v0526470.1 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0262 1 2906712 2907888 Mtr3g3869 3 52517911 52519063 PCT