Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0250 ATGGCTTACCAAAACCAACATCTTTCACAAGAGTTACCAATCCAACATTTCACAGACCAAACCAACAACAATAATAACAACTCATTCCGTTCCATATTACCAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCTAATAACCAACTCCAAACCACACCTAACTGGCTCAACAACGCAATACTTCGTACCCACTACACCGACAACAACAACAACAACAACAATAACGACGATGTTACCAACAACGTTAACAACGACAGTGACGGTAACGGAGCTTCTAATTTTCTAAACCTTCAACAAACTTCCGACACAGTGCAAACCACCGGTCAATGGCTTGCACGGTCGATTCTCCACCGTCAACATGGTGAAGTAATCGATAACGTCACCATGGCCAGCGAAGTAGAACACGAATTAGCTAATATGAAAAACGACGGTGATAGTGACGGACTTGGAGGAAAGAGTGAGGTGGCGGTTGTTGGAGATGGAGGACTGGTGAACTGGCAGATGGGGAGGTGGAAGGCGGAGATTATGGCACATCCGTTGTATGAACAGTTGTTGTCGGCACATGTGGCGTGTTTGAGGATAGCAACGCCGGTGGATCAGTTACCGAGGATTGATGCACAGTTAGCACAGTCTCAGAATGTGGTGGCCAAATACTCTGCTTTTGGACAGAACATCGGTGCTGGAGTAGATGACAAAGAACTTGACCATTTCATGTCACACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTTCGTGTCCATGCAATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGCCTAACAGGAGTTTCACCCGGAGAAGGTACAGGGGCAACAATGTCTGACGATGAAGATGAACAAGTAGACAGTGACGCAAATCTATTTGATGGTAGTTTTGATGGCGGTGCAGATAACATGGGATTTGGCCCTCTTATACCAACGGAGAATGAAAGGTCCCTAATGGAGCGCGTAAGACAAGAGCTTAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTCCTTAAGGCTTGGTGGCAATCACATTCAAAGTGGCCATATCCAACAGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAAATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAACGCAAAAGGTCTCAAAACTAG 1320 0.4447 MAYQNQHLSQELPIQHFTDQTNNNNNNSFRSILPDSPDPNSKPDSDPNNQLQTTPNWLNNAILRTHYTDNNNNNNNNDDVTNNVNNDSDGNGASNFLNLQQTSDTVQTTGQWLARSILHRQHGEVIDNVTMASEVEHELANMKNDGDSDGLGGKSEVAVVGDGGLVNWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQNIGAGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSFDGGADNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0250 439 SUPERFAMILY Homeodomain-like 361 424 IPR009057 -
Mtr1g0250 439 ProSiteProfiles ELK domain profile. 339 359 IPR005539 GO:0003677
Mtr1g0250 439 Pfam KNOX1 domain 174 214 IPR005540 GO:0003677|GO:0005634
Mtr1g0250 439 SMART KNOX2_2 226 281 IPR005541 GO:0003677|GO:0005634
Mtr1g0250 439 MobiDBLite consensus disorder prediction 18 35 - -
Mtr1g0250 439 CDD homeodomain 362 423 IPR001356 GO:0003677
Mtr1g0250 439 SMART ELK_2 339 360 IPR005539 GO:0003677
Mtr1g0250 439 SMART HOX_1 361 426 IPR001356 GO:0003677
Mtr1g0250 439 MobiDBLite consensus disorder prediction 66 96 - -
Mtr1g0250 439 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 42 437 - -
Mtr1g0250 439 Pfam ELK domain 339 360 IPR005539 GO:0003677
Mtr1g0250 439 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
Mtr1g0250 439 ProSiteProfiles 'Homeobox' domain profile. 359 422 IPR001356 GO:0003677
Mtr1g0250 439 MobiDBLite consensus disorder prediction 281 300 - -
Mtr1g0250 439 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 437 - -
Mtr1g0250 439 Gene3D - 360 421 - -
Mtr1g0250 439 SMART KNOX1_2 171 215 IPR005540 GO:0003677|GO:0005634
Mtr1g0250 439 Pfam KNOX2 domain 232 280 IPR005541 GO:0003677|GO:0005634
Mtr1g0250 439 MobiDBLite consensus disorder prediction 417 439 - -
Mtr1g0250 439 MobiDBLite consensus disorder prediction 18 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0250 Mtr-Chr1 2783281 2787443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0250 1 436 Homeobox Transcription Factor Family AT5G25220 64.062 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr1g0250 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0250 - - cam:101494477 663.299