Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0247 ATGGAGGATATTCTGAATTACGCGGAAGATCACGAGCATGGTTTGTGTAACAAAAGACGTAAAACCTTTGTTCAAGAACACACAAACATGTCCATCATTAATTCAGATTCTTTCTGTTGTGTCTGTCAAAACTCAAGCAATGATGAAGATAACCGTTTATTTGAGTGTGGTACCTGTCTAATTAAAGTGCATCAGGCTTGCTATGGTATTTCAGCATTACCTAGACGAGGTCCTTGGTGTTGTAGACCATGCAACAAAAAGTCAAAAAATATTGCTTGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACCATAGCCTTATCGAGCCACTCAATGGTAAAAAGCCTCCTAAAGGAGTGGACCTCTGAGAAAGATGGGAGGTCTATAAGGTACATAAGAAGATCTGACAAAAGGATGTCTACCAATCGCAAACGAAAAACTGCTAGCACTGTTATTATCTTAACGGAGAATAACAGCATAACAGAAGGATTTTTTGATCCCACTGTTAAGCAGTGGGTTCATATGGTTTGTGGGCTTTGGACTCCTTGGGCAAGATGCCGCAATAAAAACACCATGAGTTCTATGAATGTATCTCGTGTTTCACCTCCAAAAGCTGATGTGGTCTGTTCAATTTGCAATCGATGGGGTGGTTCATGTATAGAGTGCAGGATTGTTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTTACCAGAAGAACCTGCTACAAAATGAAATTGAGGGAGTTAATGACGAGAAAGTTGGGTTTTATGGAAGATGTGTGCTTCATGGTATTGGCCCTGAATGTCAGTCTGCATATGATCCTACTGATGCGATGGACAGTCGAAAGGAAAAGGAATTCACCTGTGCTAGGACAGAGAGCCGTAGATGGGATGGTATCAATAATAATCATTGCAGTGCCTTAAAACCCTGGGGTGGATACCGTGTTCCGGATGAGCAGTTAAATGCTTGGATTCGCATGAATGAGCAGAAATTGCGTTCACAAGGAATTCCTAAATTTCCAGATTCAGATATTGAGCGTGATCCTCAGAAAGAATATGCTCAATACAAACAAGTGAAGGGCTGGAAAAATCTTGGTGTATTCAAATCTGGGATACATGGTCTTGGTCTTTATACTTCTCAGCTCATATCTCGGGGTAGTATGGTTGTAGAGTATGTCGGTGAAATTGTGGGACAAAGCGTATCTAATAAAAGAGAAACTGAATACATATCTGGAAAGAAACTTCGGTACAAAAATGTCTGTTACTTCTTTACGATAGACAAAGAACATATAATTGATGCTACAAGGAAGGGGGGGATTGCTCGATTTATTAACCACTCATGCCTGCCAAATTGCACGTCGGAAGTGATTACTGTTAGGCATGAGAAGAAGGTTATCTTCTTTGCAAAGAGGGACATATTAGCTGGTGAAGAAATCACTTATGATTACCACTTCAACCGCGAAGATGAAGAAAAGAAAATCCCATGTTCCTGCAATTCAATAAATTGCAGGCGCTCTCTGAATTGA 1527 0.4073 MEDILNYAEDHEHGLCNKRRKTFVQEHTNMSIINSDSFCCVCQNSSNDEDNRLFECGTCLIKVHQACYGISALPRRGPWCCRPCNKKSKNIACVLCGYGGGAMTIALSSHSMVKSLLKEWTSEKDGRSIRYIRRSDKRMSTNRKRKTASTVIILTENNSITEGFFDPTVKQWVHMVCGLWTPWARCRNKNTMSSMNVSRVSPPKADVVCSICNRWGGSCIECRIVDCSVKFHPWCAYQKNLLQNEIEGVNDEKVGFYGRCVLHGIGPECQSAYDPTDAMDSRKEKEFTCARTESRRWDGINNNHCSALKPWGGYRVPDEQLNAWIRMNEQKLRSQGIPKFPDSDIERDPQKEYAQYKQVKGWKNLGVFKSGIHGLGLYTSQLISRGSMVVEYVGEIVGQSVSNKRETEYISGKKLRYKNVCYFFTIDKEHIIDATRKGGIARFINHSCLPNCTSEVITVRHEKKVIFFAKRDILAGEEITYDYHFNREDEEKKIPCSCNSINCRRSLN* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0247 508 SMART set_7 363 490 IPR001214 GO:0005515
Mtr1g0247 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 264 IPR013083 -
Mtr1g0247 508 CDD SET_SETD1-like 354 504 - -
Mtr1g0247 508 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 12 508 - -
Mtr1g0247 508 SUPERFAMILY FYVE/PHD zinc finger 32 93 IPR011011 -
Mtr1g0247 508 ProSiteProfiles Post-SET domain profile. 492 508 IPR003616 -
Mtr1g0247 508 Pfam PHD-finger 51 84 - -
Mtr1g0247 508 Pfam PHD-zinc-finger like domain 170 249 - -
Mtr1g0247 508 SMART PostSET_3 492 508 IPR003616 -
Mtr1g0247 508 ProSiteProfiles SET domain profile. 363 484 IPR001214 GO:0005515
Mtr1g0247 508 CDD ePHD 171 254 - -
Mtr1g0247 508 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 12 508 - -
Mtr1g0247 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 92 IPR013083 -
Mtr1g0247 508 ProSiteProfiles Zinc finger PHD-type profile. 36 87 IPR019787 -
Mtr1g0247 508 SMART PHD_3 38 85 IPR001965 -
Mtr1g0247 508 SMART PHD_3 208 264 IPR001965 -
Mtr1g0247 508 Gene3D SET domain 271 508 IPR046341 -
Mtr1g0247 508 Pfam SET domain 374 483 IPR001214 GO:0005515
Mtr1g0247 508 SUPERFAMILY SET domain 355 504 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0247 Mtr-Chr1 2752340 2764928 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0247 365 508 C2H2 Transcription Factor Family AT2G23740 35.583 7.81e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr1g0247 SET 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0247 - - mtr:MTR_1g012910 1079.32