Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0223 ATGGTACAACGTAACAAGTTCAGAGGAGTTAGACAACGACAGTGGGGCTCATGGGTCTCAGAAATTCGTCACCCTTTACTGAAGAGAAGGGTATGGCTAGGTACATTTGAGACAGCAGAGGCTGCAGCCAGAGCATATGATCAAGCGGCCATATTGATGAATGGAAAAAATGCCAAAACCAATTTCCCTATACCAAAGGATCAAACTGAAGATGCCAATTCCCTAACACCAAATTGTGATGATAATAATAACTCTTTCCACACTTCAAATGCTCTTTCTCATCTCCTTAAACAAAAGCTTACAAAATGTTGTCAAAAACAATCTCAATCACTCACTTGTTTGAGGCTTGATGCTGATAATTCTCACATAGGAGTCTGGCAAAAAGGAGCAGGATCACATTCTGACTCTAATTGGATCTTAAGGGTGGAGCTTGGAAAGAAACATGAAGATAGTCATGAATCAAATTATGTGTCATCATCAGAAAAATCAGCACCTAATAATAGTACAATTGTTGGTGATTGTGCTGAGAAAAATGGGATAGAACATGAAGAGGATATTGTTACCATGCAGATGATTGAAGAGCTACTTAATTGA 594 0.3872 MVQRNKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGKNAKTNFPIPKDQTEDANSLTPNCDDNNNSFHTSNALSHLLKQKLTKCCQKQSQSLTCLRLDADNSHIGVWQKGAGSHSDSNWILRVELGKKHEDSHESNYVSSSEKSAPNNSTIVGDCAEKNGIEHEEDIVTMQMIEELLN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0223 197 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Mtr1g0223 197 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Mtr1g0223 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 197 - -
Mtr1g0223 197 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Mtr1g0223 197 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Mtr1g0223 197 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Mtr1g0223 197 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Mtr1g0223 197 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Mtr1g0223 197 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Mtr1g0223 197 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0223 Mtr-Chr1 2521081 2521971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0223 1 197 AP2-EREBP Transcription Factor Family AT1G15360 54.271 1.60e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g0223 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0223 - - lang:109326202 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0223 1 2521081 2521971 Mtr1g0223 1 2521081 2521971 ECH
Mtr3g3915 3 52986002 52987309 Mtr1g0223 1 2521081 2521971 ECH
Mtr4g4133 4 55211659 55213155 Mtr1g0223 1 2521081 2521971 ECH