Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0201 ATGAAGATGTTTGGAATAAAGTCTTTTGGTCGTAAAAATGATAAACAAAAACAAACCAAAGATGATTCTAGCAGCCAATACAGTCTTACCGGATTCATTCCATCTCTCGGTGCCGCCACCATGTATGGCAGCAAGAGACAAGAGCTCCGGCGTTACATCATCTCCCCAAGCAACCGTTATTATAGACAATGGTGCAAATTTTTGATGATATGGGTTGTCTACACTGCATGGGTGTGTCCTTTTGAATTTGGGTTTCTTGAGAAATCAAGGGGTGCACTAGCTTATGCAGACAGCATTGTGAATGGATTTTTTTTCATTGACATTGTTCTCACCTTCTTTGTTGCCTACGTTGACAAGACTACTTTTCTACTCGTCGACGATCGATGGAAAATTGCTTCGAGATATTTGAAATCTTGGTTCATCCTTGATGTGTTCTCTATCATTCCTTTTGAAGGTTCTATGTTTTTGTTGCCAGATTCACTCGAGATGTATGGCTACTTCAATATTTTTCGCCTTTGGCGCCTTCGTAGAGCTAGTGCCATGTTTTCAAGGTTAGAAAAGGATAGGAATTATAACTACTTTTTGGTGCGCTGTTTAAAACTGTTATGTGTATCACTATTTGAGGTGCATTGTGCTGCCTGTTTTTTCTATTTTCTGGCTACAGTACGCAACGATAAGAAAGCTTCATGGCTATCACTTGTCTATGATGCAGACCACCTAACACTATGGGATGGATATGTAGCATCAATATATTGGTCCATATGTACACTTTCAACAGTTGGTTATGGAGATTTGCATCCTGTAAACACAGATGAAATGATATTTGACATTTTTTATATGCTATTCAATTTTGGACTTCATGCATATCTTATAGGAAACATGACCAATTTGGTTGTGCATTGGACAAATAGAACAGAGAGCTATAGGGATACTGTCCAAGCTGCATCAAATTTTTCTCGTAGGAATCGGTTACCTAAACGGTTACAAGAGCAGATATTTGCTCATTTTCATATGAAGTACAAAACAAATTTAGAAGGATTAGAGCAACAAGAGATAATGGATTCCCTTCCAAAAGCCATTAAGTCGAGCATTGCACACTACCGATTCTTTGAACGCATCCAAGACGTATACTTGTTTCATGGTGTGTCAAACGACTTACGATTTCAACTGGTGACGGAGTTGAAGGCTGAGTTTTTTCCTCCAAAGGAAGATGTAGTCTTGCAGAATGAATCACCAACAGACTTTTATATAATGGTTGTTGGAGCTGCAGATCTTATCCTTAATGAGAATGGAAAAGAAAAGTCTTTTAAAGAGGCAACGTCAGGAGATGTTTTTGGAGAAATAGGAGTGTTATGTTATAGGCCACAACCTTATACAGTTCGGACCAAACGATTAAGCCAGATCTTGCGTTTAAGTAGATCAACATTTCTAACCCTTGTTCATAACAATGTTGAAGACGGAACAATAATAATGAACAATTTTCTTCAGCATGTGCAAAATTTAAAGTATCCGATGATTGCTAGTGTTCAAACTGAAATAGAATCAATGTTGTCAAAAGGAAAAATGGATTTGCCTATAAGTTTAATATATGCAGCTAACAAACCTGATGACATGTTGTTGCATCAATTGCTGAAGAAAGGTTCAGATCCAAATGAAATAGATAATAAAACTGGAAGGACAGCACTGCATATTGCAGCTTCTAAAGGTAATAACCATTGTGCGGTTTTGCTTCTTGAATTCGGAGCTGATCCCAACATACAAGATTTTGAAGGAGATATACCACTATGGGAAGCAATTAAGGGAGGGCATGAATCAATGATAAAACTACTTATGGACAATGGTGCAGATATATCTTCTGCTAATATAGCTAGTTTAGCATGCTTTGCTGTGGAGAAAAATAACATTCAATTCCTGAAAGATATTGTAAAATATGGTGGTGATATTGTGACAAAGTCCACAAATGATGGAACCACTGCACTTCATACTGCTGTGTGTCATGGAAATGTAGAAATAGTGAAGTTTCTTGTAGAACAAGGAGCAGATATTGATAAGCCAGATGGCTTTGGTTGGAGTTCAAGAGCTTATGCAAATCAAGAATGCCATGAAGAAATACAAAATATGTTTAAAGAAATTGAACAAGATAACACAATTCCTTATGATATTTCATCAACGCGAAAAAATAATGGAAGGCTATTTATTGAAACGGATCAAAGTGAACCTTCTATGCTAGCTAGTCCTCGAGGTGGTATGTTTCCACCTAATCAAGAACCTTCTATGCTAGCTAGTCCTCGAGGTGGTATGTTTCCACCTAATCAAGAGTTAACATGGTTGGATAGTCCTCAGAGAAGGAAGGTTAGCCTCCCTTATGATATTCCATCAAGGCCAAAAACTAATGGAGGGCCATTTATTGGAATCCCTCAAAGTGAACCTTCTATACAAGCTAGTCCTCAGAGAAGAAAGGTTAGCCCTTTTAGAAATTCCTTTTTTGGAATGATTGCAGCTGCTAATCGAGATAAAGTGGGTTCCCCCTCATCTCAAAGCAGTACTGCACCAATTAGAGTAATGCTTAGTTGTCAAGAAAAAAGTGAACATCCTAAAAGGCTTGTTTTTCTACCAAAGTCCCTTCAAGAGTTGCTAGATGTTGGTGCTAAAAAGTTTGACTTTTCTCCCACCAAAATCTTGACTGAAGATGGAGCTGAAGTTGAAGAAATAAACTTGATAAGAGAGGGTGATCATCTTATTCTTGCTTGA 2751 0.3773 MKMFGIKSFGRKNDKQKQTKDDSSSQYSLTGFIPSLGAATMYGSKRQELRRYIISPSNRYYRQWCKFLMIWVVYTAWVCPFEFGFLEKSRGALAYADSIVNGFFFIDIVLTFFVAYVDKTTFLLVDDRWKIASRYLKSWFILDVFSIIPFEGSMFLLPDSLEMYGYFNIFRLWRLRRASAMFSRLEKDRNYNYFLVRCLKLLCVSLFEVHCAACFFYFLATVRNDKKASWLSLVYDADHLTLWDGYVASIYWSICTLSTVGYGDLHPVNTDEMIFDIFYMLFNFGLHAYLIGNMTNLVVHWTNRTESYRDTVQAASNFSRRNRLPKRLQEQIFAHFHMKYKTNLEGLEQQEIMDSLPKAIKSSIAHYRFFERIQDVYLFHGVSNDLRFQLVTELKAEFFPPKEDVVLQNESPTDFYIMVVGAADLILNENGKEKSFKEATSGDVFGEIGVLCYRPQPYTVRTKRLSQILRLSRSTFLTLVHNNVEDGTIIMNNFLQHVQNLKYPMIASVQTEIESMLSKGKMDLPISLIYAANKPDDMLLHQLLKKGSDPNEIDNKTGRTALHIAASKGNNHCAVLLLEFGADPNIQDFEGDIPLWEAIKGGHESMIKLLMDNGADISSANIASLACFAVEKNNIQFLKDIVKYGGDIVTKSTNDGTTALHTAVCHGNVEIVKFLVEQGADIDKPDGFGWSSRAYANQECHEEIQNMFKEIEQDNTIPYDISSTRKNNGRLFIETDQSEPSMLASPRGGMFPPNQEPSMLASPRGGMFPPNQELTWLDSPQRRKVSLPYDIPSRPKTNGGPFIGIPQSEPSIQASPQRRKVSPFRNSFFGMIAAANRDKVGSPSSQSSTAPIRVMLSCQEKSEHPKRLVFLPKSLQELLDVGAKKFDFSPTKILTEDGAEVEEINLIREGDHLILA* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0201 916 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g0201 916 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g0201 916 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g0201 916 PRINTS EAG/ELK/ERG potassium channel family signature 246 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g0201 916 PRINTS EAG/ELK/ERG potassium channel family signature 272 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g0201 916 PRINTS EAG/ELK/ERG potassium channel family signature 290 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g0201 916 SUPERFAMILY cAMP-binding domain-like 303 498 IPR018490 -
Mtr1g0201 916 Pfam KHA, dimerisation domain of potassium ion channel 853 915 IPR021789 -
Mtr1g0201 916 SUPERFAMILY Ankyrin repeat 527 711 IPR036770 -
Mtr1g0201 916 ProSiteProfiles Ankyrin repeat profile. 590 622 IPR002110 GO:0005515
Mtr1g0201 916 PRINTS Ankyrin repeat signature 558 573 IPR002110 GO:0005515
Mtr1g0201 916 PRINTS Ankyrin repeat signature 606 620 IPR002110 GO:0005515
Mtr1g0201 916 CDD CAP_ED 378 491 IPR000595 -
Mtr1g0201 916 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Mtr1g0201 916 SUPERFAMILY Voltage-gated potassium channels 56 299 - -
Mtr1g0201 916 PANTHER POTASSIUM CHANNEL AKT1 12 756 IPR045319 GO:0005249|GO:0006813
Mtr1g0201 916 PANTHER POTASSIUM CHANNEL AKT1 807 916 IPR045319 GO:0005249|GO:0006813
Mtr1g0201 916 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Mtr1g0201 916 MobiDBLite consensus disorder prediction 7 21 - -
Mtr1g0201 916 MobiDBLite consensus disorder prediction 1 26 - -
Mtr1g0201 916 ProSiteProfiles KHA domain profile. 853 916 IPR021789 -
Mtr1g0201 916 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Mtr1g0201 916 ProSiteProfiles Ankyrin repeat region circular profile. 590 621 - -
Mtr1g0201 916 SMART ANK_2a 621 650 IPR002110 GO:0005515
Mtr1g0201 916 SMART ANK_2a 557 586 IPR002110 GO:0005515
Mtr1g0201 916 SMART ANK_2a 655 684 IPR002110 GO:0005515
Mtr1g0201 916 SMART ANK_2a 590 619 IPR002110 GO:0005515
Mtr1g0201 916 SMART ANK_2a 523 552 IPR002110 GO:0005515
Mtr1g0201 916 SMART cnmp_10 378 495 IPR000595 -
Mtr1g0201 916 Gene3D - 63 299 - -
Mtr1g0201 916 Gene3D Helix hairpin bin 303 367 - -
Mtr1g0201 916 Pfam Ankyrin repeats (3 copies) 528 619 IPR002110 GO:0005515
Mtr1g0201 916 Pfam Ankyrin repeats (3 copies) 628 685 IPR002110 GO:0005515
Mtr1g0201 916 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 12 756 - -
Mtr1g0201 916 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 807 916 - -
Mtr1g0201 916 Gene3D Jelly Rolls 371 507 IPR014710 -
Mtr1g0201 916 Gene3D - 525 710 IPR036770 -
Mtr1g0201 916 Pfam Ion transport protein 63 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr1g0201 916 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
Mtr1g0201 916 ProSiteProfiles Ankyrin repeat region circular profile. 557 588 - -
Mtr1g0201 916 ProSiteProfiles Ankyrin repeat region circular profile. 655 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0201 Mtr-Chr1 2281737 2287432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0201 19 916 Ion Channels AT2G25600 50.494 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0201 K21867 - gmx:100809960 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0201 1 2281737 2287432 Mtr1g0201 1 2281737 2287432 ECH
Mtr1g0201 1 2281737 2287432 Mtr3g3941 3 53153390 53159286 PCT