Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0189 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTTGTGAAGAGGGATTTGAAAGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCTTCTGATCCTGTTGCTATTGACGCTCCGGGAGGATTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTCATTGCCAGGACGAACGAGAAGCATTCGGAAGTTGCCGCGTCTTATATCGAGACACAGTTAATTAAGGCCAGGGAGCAGCAGCAGCAACAGCAGCAGCAGCCACAACCTCAGCAATCACCACATCAACAGCAGCAACAGCAACAACAACATCAGATGCAGATGCAACAGATGCTGTTACAGAGGCAACACCAGCAGCAACAGCAGCAACAGCAACAGCAACAACAGCAACAACAGCAGCAGCAGCAGCAGCCGCAACATCAGCAGCAACAACAGCAGCAGCAACAGCAACAGCAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGCGGTGGTGCAAATGGATTAGTTGGAAACCCTAGCACTGCAAATGCTATAGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCTCTTCAAAGGGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGATCCAAATCATGCTTCAATACTAAAGTCTTCTGCAGCTACTGGCCAGCCGTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACTCTGGATATAAAAACTGAGATCAATCCTGTATTGAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGATGGCAGTTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGTTTGGAGCATCTACGTTCTGGTTTACTCCAGCAACAAAAACCTTTCATACAGAGTCCACAGCCTTTTCATCAACTTCCAATGTTGACACAACAACATCAGCAACAACTTATGTTAGCTCAGCAAAACCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTACTGAATCCTCGAAATATGGGCGTAAGTAAGGATGGCCTTTCAAATCCTGTTGGTGATGTAGTATCAAATGTTGGATCGCCCCTTCAAGCCGGTGGTCCTCCATTTCCTCGTGGGGATCCAGATATGTTAATGAAGTTACAACATCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACTTCAACAACAGCATTCTCTTTCAAATCAGCAATCACAGTCTGCAAATCATAACATGCATCAGCAAGATAATAAAGTAGGGGGAGGTGGTGGCAGTGTAACTGGAGACGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGCCTGGAAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACGGCTAATACAGCAGGACCATCGCCGAGTTCAGCACCCTCAACTCCCTCAGGCTCAACTCACACGCCTGGTGATGTGATATCAATGCCTTCTTTACCTCATAATGGTAGTTCTTCTAAGCCATTAATGATGTTTAGCACTGATGGCAATACCTCACCTTCAAACCAATTGTGGGATGATAAGGATATTGAATTGCAGGCAGATGTGGACCGCTTTGTAGCAGATGGATCTCTCGATGACAATGTTGAGTCTTTTTTATCACATGATGATACCGACCCTAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAATTAAATTCAGTTCGTGCAAGCACAAATAAAGTTGTTTGTAGCCATTTCTCATCCGACGGAAAATTGCTTGCAAGTGGTGGTCATGACAAAAAGGTTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACCCTCGAAGAACATTCACTTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATACGACAAAACTGTCCGGGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGTACCTTCACTGGGCATTCTGCAGCTGTTATGTCACTAGACTTTCATCCTAATAAAGATGACCTTATCTGCTCTTGTGATTGTGATGGCGAGATAAGATATTGGAGTATTAACAATGGCAGTTGTGCTAGAGTGTCAAAGGGTGGCATGGCACAGATGAGATTTCAACCTCGTCTAGGGAGATTCCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTTGAGACACAAGCATGCCGATATTCTCTAAAGGGTCACACAAAGTCAATACATTCTGTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCCGGGAGTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAATAAGTTTCACTCGTGCGTTTTCCATCCAACGTATTCTTCACTGTTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGACCGAGAACAAGACGATGACTCTATCTGCTCACGACGGTCTTATTGCTGCACTGGCCGTTTCAACTGTAAACGGTTTGGTTGCTTCTGCCAGTCATGACAGGTTTGTCAAGCTCTGGAAGTGA 2694 0.4543 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQPQQSPHQQQQQQQQHQMQMQQMLLQRQHQQQQQQQQQQQQQQQQQQQQPQHQQQQQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTLDIKTEINPVLNPRAAGPEGSLMAVPGSNQGGNNLTLKGWPLTGLEHLRSGLLQQQKPFIQSPQPFHQLPMLTQQHQQQLMLAQQNLASPSASDDSRRLRMLLNPRNMGVSKDGLSNPVGDVVSNVGSPLQAGGPPFPRGDPDMLMKLQHQQQQNANPQQQQLQQQHSLSNQQSQSANHNMHQQDNKVGGGGGSVTGDGSMSNSFRGNDQVSKSQPGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSLPHNGSSSKPLMMFSTDGNTSPSNQLWDDKDIELQADVDRFVADGSLDDNVESFLSHDDTDPRDPVGRMDVSKGFTFSELNSVRASTNKVVCSHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSLLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSAAVMSLDFHPNKDDLICSCDCDGEIRYWSINNGSCARVSKGGMAQMRFQPRLGRFLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDRFVKLWK* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0189 897 MobiDBLite consensus disorder prediction 150 167 - -
Mtr1g0189 897 MobiDBLite consensus disorder prediction 234 258 - -
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 698 736 - -
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 865 897 IPR001680 GO:0005515
Mtr1g0189 897 Coils Coil 117 146 - -
Mtr1g0189 897 SMART WD40_4 606 645 IPR001680 GO:0005515
Mtr1g0189 897 SMART WD40_4 648 687 IPR001680 GO:0005515
Mtr1g0189 897 SMART WD40_4 691 731 IPR001680 GO:0005515
Mtr1g0189 897 SMART WD40_4 858 897 IPR001680 GO:0005515
Mtr1g0189 897 SMART WD40_4 817 856 IPR001680 GO:0005515
Mtr1g0189 897 SMART WD40_4 773 811 IPR001680 GO:0005515
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 690 - -
Mtr1g0189 897 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 897 IPR044716 GO:0003714
Mtr1g0189 897 SUPERFAMILY WD40 repeat-like 608 897 IPR036322 GO:0005515
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 865 897 - -
Mtr1g0189 897 PRINTS G protein beta WD-40 repeat signature 632 646 IPR020472 -
Mtr1g0189 897 PRINTS G protein beta WD-40 repeat signature 674 688 IPR020472 -
Mtr1g0189 897 PRINTS G protein beta WD-40 repeat signature 884 897 IPR020472 -
Mtr1g0189 897 Pfam LisH 10 36 IPR006594 GO:0005515
Mtr1g0189 897 SMART Lish 8 40 IPR006594 GO:0005515
Mtr1g0189 897 Gene3D - 570 742 IPR015943 GO:0005515
Mtr1g0189 897 Gene3D - 743 897 IPR015943 GO:0005515
Mtr1g0189 897 MobiDBLite consensus disorder prediction 89 123 - -
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 820 IPR001680 GO:0005515
Mtr1g0189 897 MobiDBLite consensus disorder prediction 412 553 - -
Mtr1g0189 897 CDD WD40 613 897 - -
Mtr1g0189 897 Pfam WD domain, G-beta repeat 694 731 IPR001680 GO:0005515
Mtr1g0189 897 Pfam WD domain, G-beta repeat 614 644 IPR001680 GO:0005515
Mtr1g0189 897 Pfam WD domain, G-beta repeat 776 810 IPR001680 GO:0005515
Mtr1g0189 897 Pfam WD domain, G-beta repeat 860 897 IPR001680 GO:0005515
Mtr1g0189 897 Pfam WD domain, G-beta repeat 653 687 IPR001680 GO:0005515
Mtr1g0189 897 ProSitePatterns Trp-Asp (WD) repeats signature. 674 688 IPR019775 -
Mtr1g0189 897 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 897 - -
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 690 IPR001680 GO:0005515
Mtr1g0189 897 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mtr1g0189 897 MobiDBLite consensus disorder prediction 372 553 - -
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 613 644 - -
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 740 IPR001680 GO:0005515
Mtr1g0189 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 654 IPR001680 GO:0005515
Mtr1g0189 897 MobiDBLite consensus disorder prediction 150 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0189 Mtr-Chr1 2142155 2152729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0189 692 896 Miscellaneous Gene Families AT5G08390 25.714 7.80e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mtr1g0189 WD40 0.043 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0189 - - gmx:100779972 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0189 1 2142155 2152729 Mtr3g3953 3 53250549 53258556 PCT