Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0179 ATGGAGCGACCCGGGAGCGTCAACGACGGTCAACATATTATAGAAATAGCTGGGAGTGCCGAGGCTTCTACATCCGCCTCGTCTCGTGATAGACAATTTAATGGGGTAGATGTGTCGCATCGTGAAGAAAGAGTAGGTGCTGTGCGGTTAACTGTTGGTCAGAATTCAGTTTCAACCTTAGGCATATCAACTGAATCAAATAGGAGGAATTCTTCCTCTGTAAGGAGAGGGGACGCCCGTCGGAGTCGGAGTCCTGTGCATTCTGGGCTATGGATATCTATTGAGCTAGTCCTCTTAGTAAGTCAGATTGTTGCATCTATTGTTGTTTTGTCGCTGTCAAGGAATGAACATCCACAGACCCCGTTGTTTCAATGGATAGTGGGCTATGCTTCTGGATGTGTTGCTACCCTCCCTCTTCTTTTTTGGCGGTATTATAATCATAACCATCTGCGAGAACAAGATTCAGCTCAGTCACGTCAAACATCTCCTCGGATTAGTGACCCTTCTGGGACATTTCTTTCGATTTCCAGAAATAATGGAGATGCTGGTCAGGCTGCTGCTGCATCCTCCAGAAGTAATCAAACTTCAATATTGATGAATAGAAGAATGAAGATACTTGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTGTGGTTTGTTGTTGGAAACGTATGGATCTTTGGAGGACGATCTTCTGCTGCTGTAGCTCCTAACTTGTATAGGTTGTGTATAGTGTTCCTTGCATTTAGCTGTATTGGTTATGCCATGCCTTTCATTCTCTGTTCAACCATCTGCTGTTGTCTCCCGTGTATAATTTCCATCCTTGGCGTTAGAGAGGATCTGTCACAAAACAGAGGAGCAACTTCCGAATCCATTAATGCTCTACCAACTTACAAGTTCAAGATGAAGAAAAATAAAAAAAATAGTGAAAACAACTCTGCCAATATAGATGGTGGAACTGTTGCCGCAGGAACCGAAAAAGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCCAAGTATGAAAACAACGATGAGCTGAGAGAGTTGCCTTGTTCTCATCTTTTCCACAAAGATTGCGTTGATAAGTGGTTGAAGATAAATGCATTGTGCCCGCTTTGCAAGAGTGAAGTTGGTGAAGACCTAACAGGATTGGGGTCTGGAGAAGATGCCACCCAACAACGGGATGAGAGCAGAGTTGTAAATGGCATTGCCAATCCCTAG 1245 0.4394 MERPGSVNDGQHIIEIAGSAEASTSASSRDRQFNGVDVSHREERVGAVRLTVGQNSVSTLGISTESNRRNSSSVRRGDARRSRSPVHSGLWISIELVLLVSQIVASIVVLSLSRNEHPQTPLFQWIVGYASGCVATLPLLFWRYYNHNHLREQDSAQSRQTSPRISDPSGTFLSISRNNGDAGQAAAASSRSNQTSILMNRRMKILVEYFKISLDCFFAVWFVVGNVWIFGGRSSAAVAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLSQNRGATSESINALPTYKFKMKKNKKNSENNSANIDGGTVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGEDLTGLGSGEDATQQRDESRVVNGIANP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0179 414 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 406 - -
Mtr1g0179 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 393 IPR013083 -
Mtr1g0179 414 MobiDBLite consensus disorder prediction 392 414 - -
Mtr1g0179 414 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 406 - -
Mtr1g0179 414 MobiDBLite consensus disorder prediction 61 81 - -
Mtr1g0179 414 SMART ring_2 341 381 IPR001841 -
Mtr1g0179 414 Pfam Ring finger domain 341 382 IPR001841 -
Mtr1g0179 414 SUPERFAMILY RING/U-box 332 389 - -
Mtr1g0179 414 MobiDBLite consensus disorder prediction 394 408 - -
Mtr1g0179 414 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Mtr1g0179 414 CDD RING-H2_RNF111_like 340 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0179 Mtr-Chr1 2039021 2044212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0179 68 387 C3H Transcription Factor Family AT1G80400 56.748 4.45e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0179 - - gmx:100785559 628.246