Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0175 ATGGGAAATTCAAAGAAAGAAGAAGAAAGAGTTGAAAGAATAATTCGAGGTCTTTTAAAACTTCAAGAAAATCGAAGATGTATCAATTGCAATATCTTGGGACCACAATATGTCTGTACAACTTTCTCAACATTTGTATGCACAAATTGCAGTGGACTACATCGAGAATTCACACATAGAGTAAAATCTGTCTCAATGGCAAAATTTACTCCTGAAGAAGTTACTGCTCTTCAAGCTGGTGGCAATGAGAGAGCAAAGCAAATTTATTTCAAAGGATGGGATCCCCTACGGCATTCTTATCCTGATTCCAGTAATATGCACAGACTTAGAGATTTTATCAAGCATGTCTATGTGGATAGAAAATATACCGGCGAAAAAAGTCAAGAAAATCTTCCCAGGATTAAATTGAATGACAAGGAGGAGTCCTATGAGAGTAAGAGGAGTAGTTCATTTCGTTTAGAGTTCATAACTACGAAGTCAAGTCCCGGTGCAAGAAGCAGTCCTGGTCCAAGAAGCGGTCCTGGTCCAAGAAGCGACAACTCGAGTTTCAGATATGTATATGATGAAAGCAGAAGTCCTAAATATGTTAGAAAATATTCCAGATATGGGGGAGTAACTAGAAGTCCTATAAAAATAGAGGTTGTTGATAACAGGTTTCGAGACGATGAATATAGAAACCGCAGGCTTTCGAATCTTGAATCAAAGCTAAAACAACTTTCAGTTGATGGTCAGAAGAATGTCGAAAGAATTCAAGCTCCGGTCGAAAGCTCTTCGGGTGAAAAAATAACGGAGAATGATTCATCTTCACAAGTTACAACTTCTGGTGGAGAAGGTTCTGTTGAGGAAAAACCATCTGAACAAAAAAGTAATAAATCAAGAAGCTTCAATGATTCGAGTATTAAGTCTCAAGCTTCTGATACTGCTATTGTACCTGTACAAGAAACACCAAGTATGACACAGGAAAGTGAAAATAACTGGGCCTCATTTGAAGTTTCTAATACTGCTATTGTACCTGTAGAAGAAACACCAAGCATGACCATGAGATCTTCTACAACAGAACCAAAACCTGAGGCAACAATATCAAATCCTTTAGACCTTTTACTTCTTGAATTGTCAGGCCCTTTTGCTCCAACCACTAGTGGCATATCAGAAGTTCCAAGTGGTGGCATTGTTCCAACAACTACAACATTAGAAATGGACTCTACATGGGATTTTCCATCTACTTCAATGGAGGCAAAACCTTCTAATGGTGCTCCTCCACCGCAATCTGAGCTACATGAGACAGAAGACTCCATTGAAGTTTCACATGCACATGAACCACCAAACATGCAATATCCTCCTTCTGTTTCAGTTGGTTGTAGTTCAATAGCACAACCAACAAATTCACCAAACAATGCGACTTTAAATAAAGAGCCATCATTTTCTCCTAGTACACATGAATCATCGCATGCTTTTACCGAAACTTCTTCAAAAACCACCCCAAATCATAATCAAGATACCAGACCTCCTGTTGGCTCTCAGCCTAATACTATGGAAACCAAGTCTAGTGGAAGAATGGAACTTCCAGAGGACCTTTTTAGTACACGATACTTATCCGGCCCTGCAGCACATGCAGGCTGGCAGAATCTTCAACATCATGTCATGGGATATGGCATGCAGTATTACCCTAATGCAATGCCTCCTCCAGCACTTCCAACTGCACCAAAATACATGAACCCGTTTGACATAACTGAAGGGAGAAGTCTAGCGCATGCAACATCGTGTCCTACCATGGAATCAATGAACGGCGTGCTTCCAGCTGTACCGACAAGAACAGGACTAATGCATGCTTCAAGTCTTGGCTCTTTAGATACCACGGTGCCTTATTCCGCAAGTTATCCATCTCCAATTACTGGTGTATGCTTTGATCAACATAATAATGAAGATCAACATTTTAGATCACAAAGAGTTGACACTTTCAATGGTTTTGGATCTCTAGACCCCATTCAACAGTCATATGGGGGATATGGGACACATGGAATTCCAAATTCTTTTTCCAATATAAGAAGAAATCCATTTGAATAA 2064 0.3973 MGNSKKEEERVERIIRGLLKLQENRRCINCNILGPQYVCTTFSTFVCTNCSGLHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKGWDPLRHSYPDSSNMHRLRDFIKHVYVDRKYTGEKSQENLPRIKLNDKEESYESKRSSSFRLEFITTKSSPGARSSPGPRSGPGPRSDNSSFRYVYDESRSPKYVRKYSRYGGVTRSPIKIEVVDNRFRDDEYRNRRLSNLESKLKQLSVDGQKNVERIQAPVESSSGEKITENDSSSQVTTSGGEGSVEEKPSEQKSNKSRSFNDSSIKSQASDTAIVPVQETPSMTQESENNWASFEVSNTAIVPVEETPSMTMRSSTTEPKPEATISNPLDLLLLELSGPFAPTTSGISEVPSGGIVPTTTTLEMDSTWDFPSTSMEAKPSNGAPPPQSELHETEDSIEVSHAHEPPNMQYPPSVSVGCSSIAQPTNSPNNATLNKEPSFSPSTHESSHAFTETSSKTTPNHNQDTRPPVGSQPNTMETKSSGRMELPEDLFSTRYLSGPAAHAGWQNLQHHVMGYGMQYYPNAMPPPALPTAPKYMNPFDITEGRSLAHATSCPTMESMNGVLPAVPTRTGLMHASSLGSLDTTVPYSASYPSPITGVCFDQHNNEDQHFRSQRVDTFNGFGSLDPIQQSYGGYGTHGIPNSFSNIRRNPFE* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0175 687 PANTHER ARFGAP/RECO-RELATED 1 687 IPR044820 GO:0005096
Mtr1g0175 687 MobiDBLite consensus disorder prediction 400 518 - -
Mtr1g0175 687 CDD ArfGap_AGFG 12 122 - -
Mtr1g0175 687 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Mtr1g0175 687 MobiDBLite consensus disorder prediction 154 186 - -
Mtr1g0175 687 MobiDBLite consensus disorder prediction 447 516 - -
Mtr1g0175 687 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 687 - -
Mtr1g0175 687 MobiDBLite consensus disorder prediction 291 324 - -
Mtr1g0175 687 MobiDBLite consensus disorder prediction 400 416 - -
Mtr1g0175 687 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Mtr1g0175 687 MobiDBLite consensus disorder prediction 247 280 - -
Mtr1g0175 687 MobiDBLite consensus disorder prediction 247 324 - -
Mtr1g0175 687 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Mtr1g0175 687 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Mtr1g0175 687 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Mtr1g0175 687 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Mtr1g0175 687 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Mtr1g0175 687 SMART arf_gap_3 12 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0175 Mtr-Chr1 1927107 1932567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0175 12 122 C2H2 Transcription Factor Family AT4G21160 32.479 3.23e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0175 - - cam:101499268 938.332