Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0167 ATGGGCGAGGTGGCAGTGTTGCATTCTGAGCCTCTGCAATTTGAATGCAATGACAAGAAACATATGACCGAAGAAGGCGTTTATCCTCCAAAATCAAATCCGGAATCCTTGCCTGGAGAAGAATCAAGTACATATGATTTGCAGGAGAAGGGATATATGGAACATGGATGCCAACACTACCGGAGAAGATGCCGAATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACGTAGATTATAAGCATAGACACGACATGCCTCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGTGCTGAACAAGAGGCACAGCAAAATTGCGTTAATTGTGGTGTTTGCATGGGCAAGTACTTTTGTGATACATGCAAGCTCTACGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGCGGACAAGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAGAGACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCATTGTTATGCCGTGCGGACATACAATCCATAAAAGCTGTCTGAATGAAATGAGAGAACATTTCCAGTTCACATGCCCTCTCTGTTCAAAGTCGGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTTCCGCTACACCAATGCCTGAGCCATATCAAAACAAAATGGTTTGGATCCTGTGCAATGATTGTGGAAAAACCTCTAATGTCCGGTTCCATTTTGTAGCGCAAAAATGCCTCAACTGCAATTCCTACAACACACGACAAACACGAGGCTGA 909 0.4301 MGEVAVLHSEPLQFECNDKKHMTEEGVYPPKSNPESLPGEESSTYDLQEKGYMEHGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINVDYKHRHDMPRHQVKQVICSLCGAEQEAQQNCVNCGVCMGKYFCDTCKLYDDDISKQQYHCNGCGICRTGGQENFFHCNKCGCCYSTLLRDSHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLNEMREHFQFTCPLCSKSVCDMSKVWEKLDMEISATPMPEPYQNKMVWILCNDCGKTSNVRFHFVAQKCLNCNSYNTRQTRG* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0167 302 ProSiteProfiles Zinc finger RING-type profile. 193 236 IPR001841 -
Mtr1g0167 302 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 25 302 - -
Mtr1g0167 302 SUPERFAMILY Zinc hairpin stack 129 186 IPR037275 -
Mtr1g0167 302 MobiDBLite consensus disorder prediction 23 43 - -
Mtr1g0167 302 ProSiteProfiles Zinc finger CTCHY-type profile. 128 192 IPR017921 -
Mtr1g0167 302 SUPERFAMILY RING/U-box 192 240 - -
Mtr1g0167 302 SMART ring_2 193 235 IPR001841 -
Mtr1g0167 302 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 302 - -
Mtr1g0167 302 Gene3D - 264 302 - -
Mtr1g0167 302 ProSiteProfiles Zinc finger CHY-type profile. 50 126 IPR008913 GO:0008270
Mtr1g0167 302 Pfam Zinc-ribbon 240 298 IPR039512 -
Mtr1g0167 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 238 IPR013083 -
Mtr1g0167 302 Pfam Ring finger domain 192 235 IPR001841 -
Mtr1g0167 302 SUPERFAMILY CHY zinc finger-like 54 128 IPR037274 GO:0008270
Mtr1g0167 302 Pfam CHY zinc finger 57 138 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0167 Mtr-Chr1 1827640 1836086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0167 55 302 C2H2 Transcription Factor Family AT3G18290 38.189 4.07e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0167 K10144 - gmx:100803569 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0167 1 1827640 1836086 Mtr3g3977 3 53466569 53471787 PCT