Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr1g0137 | ATGTCAGGATTAACGTGCAATTCTTGCAACACAGAATTCACACATGACGCTGATCAAAAGCTTCATTACAAATCTGAATGGCATCGCTACAATCTCAAACGCAAGGTGGCTGGGGTTCCTGGAGTGACAGAAGCATTGTTTCTAGCTAGACAAGCTGCACTTGCTCAAGAGAGGGATAAATCTAATGAAAGCCCTATGCTCTATAGCTGTGGCCTATGTGGCAAGGGATACAAAAGTGAAAAGGCTCATGCCGAGCATCTTAAGTCCAGAACTCATATGATGCGGGCTTCTGAAGGAGATAGTCAGTCAGATGGGAAGGCTATAATTAAGCCACTTCCACAACGCGTTGTGAATAAGCCTCCTCCTAAAAGAGTGGTTGATAACTCTGCAGAAGATGATGACAGTGAAGATGAATGGGTGGAGGTTGATTCTGATGATGATCTGGTTGATGATGCTGCAAAGTCCTTGACAGATATGAACATGGACGAGAATGATGAAAATGATGACATGGATGAGGATGATGTTGTGGACTTGGATCCATCGTGTTGTTTTATGTGTGATCATAAGCACAAAACAATAGAAAACTGCATGGTTCATATGCACAAGCATCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAAGATCCAAAAGGACTCCTCACTTATCTTGGGCTGAAGGTCAAAAGAGACTACTTGTGTCTGTACTGCAACGATCGGTGTCATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACACATGGTAGCGAAAAATCACTGCAAGGTGCATTATGGTGATGATGACGATGAGGAGGAAGTAGAGTTGGAAGAATTCTATGATTATACCAGCAGTTATGTTGATGAGCAAGGGAAGCAGCTAGTTGTATCTGGTGATGCTGATAATAATATAGAACTTAGTGATGGGTCTGAGCTCGTAATCACTAAGATGTCTGGTGACAAAAAATCAACGAGAACTCTAGGTTCCCGTGAATACTTGCGTTATTATCGTCAGAAACCACGTCCATCACCAGCAAATAACATTGCCATTACTGCGGAATTGGCTGCAAGGTACAGGAGCATGGGTTTGGCCACTGTCCAATCAAGGCAGCAAATTGTGAGAATGAAAGTGTTGAAGCAGATGAACAGATCAGGTGTGGAGCATATGCGTAGCAAGATGGGGATGAAGAGTAATGTAATCCGGAACCTGCCAAACAATGTCACATATTAG | 1227 | 0.4295 | MSGLTCNSCNTEFTHDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAQERDKSNESPMLYSCGLCGKGYKSEKAHAEHLKSRTHMMRASEGDSQSDGKAIIKPLPQRVVNKPPPKRVVDNSAEDDDSEDEWVEVDSDDDLVDDAAKSLTDMNMDENDENDDMDEDDVVDLDPSCCFMCDHKHKTIENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRKHMVAKNHCKVHYGDDDDEEEVELEEFYDYTSSYVDEQGKQLVVSGDADNNIELSDGSELVITKMSGDKKSTRTLGSREYLRYYRQKPRPSPANNIAITAELAARYRSMGLATVQSRQQIVRMKVLKQMNRSGVEHMRSKMGMKSNVIRNLPNNVTY* | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr1g0137 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 166 | 242 | IPR036236 | - | |
| Mtr1g0137 | 408 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 68 | 97 | IPR013087 | - | |
| Mtr1g0137 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 92 | IPR013087 | - | |
| Mtr1g0137 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 98 | IPR036236 | - | |
| Mtr1g0137 | 408 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
| Mtr1g0137 | 408 | SMART | c2h2final6 | 68 | 92 | IPR013087 | - | |
| Mtr1g0137 | 408 | SMART | c2h2final6 | 232 | 259 | IPR013087 | - | |
| Mtr1g0137 | 408 | Pfam | Zinc-finger of C2H2 type | 68 | 92 | - | - | |
| Mtr1g0137 | 408 | MobiDBLite | consensus disorder prediction | 84 | 99 | - | - | |
| Mtr1g0137 | 408 | PANTHER | ZINC FINGER PROTEIN-RELATED | 1 | 408 | - | - | |
| Mtr1g0137 | 408 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 408 | IPR040025 | - | |
| Mtr1g0137 | 408 | Pfam | C2H2 type zinc-finger (2 copies) | 183 | 284 | IPR041661 | - | |
| Mtr1g0137 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
| Mtr1g0137 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 4 | 36 | IPR036236 | - | |
| Mtr1g0137 | 408 | MobiDBLite | consensus disorder prediction | 131 | 146 | - | - | |
| Mtr1g0137 | 408 | MobiDBLite | consensus disorder prediction | 84 | 146 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr1g0137 | 1 | 408 | C2H2 Transcription Factor Family | AT4G31420 | 62.892 | 0.0 | 521 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr1g0137 | K14816 | - | gmx:100809681 | 598.201 |