LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g0136	ATGGGAGGTATCAGCCTCGAAGAGATTAAAAATGAAAGCGTCGATCTTGAACGGATTCCAATAGACGAGGTGTTTGAGCAGCTAAAATGTTCAAGACAAGGTCTGACATCAGAAGAAGGAGCCAACAGGCTTCAAGTCTTTGGACCAAACAAATTGGAAGAGAAAAAAGAGAGCAAGTTTTTGAAGTTTTTGGGTTTTATGTGGAATCCTTTATCATGGGTTATGGAAGCTGCTGCTATCATGGCCATTGCTTTGGCTAATGGAAGTGGAAGGCCCCCTGATTGGCAAGACTTTGTCGGAATCATTGCTTTGTTAGTCATCAATTCCACAATCAGTTTCATTGAAGAAAACAATGCCGGCAATGCCGCCGCTGCTCTCATGGCTGGTTTAGCTCCCAAAACCAAGGTACTAAGAGATAGTAGATGGAGTGAACAAGATGCTGCAATTTTAGTACCAGGAGACATAATCAGCATCAAGTTAGGAGATATTGTTCCAGCTGATGCGCGTCTTCTTGAGGGAGATCCTTTGAGCATAGATCAGTCTGCTTTAACAGGAGAATCACTTCCTGTAACAAAGAGTTCATCGGACGAAGTGTTTTCAGGTTCGACGGTTAAGAAGGGTGAGATTGAAGCAGTTGTTATTGCTACTGGTGTGCATACTTTTTTCGGTAAAGCGGCTCATTTGGTTGATAGTACTAATCAAGTTGGACACTTTCAGAAAGTGCTTACAGCAATTGGAAACTTCTGCATTTGTTCAATCGCTATTGGAATATTGGTTGAGCTTATAGTGATGTATCCGATACAACACCGCAAGTATAGAGATGGAATCGACAATCTTTTGGTGCTTTTGATTGGTGGAATTCCAATTGCAATGCCAACTGTTTTGTCTGTCACTATGGCTATTGGTTCTCATAGGCTTTCACAGCAAGGTGCAATTACAAAAAGAATGACAGCTATTGAGGAAATGGCTGGAATGGATGTTCTTTGCAGTGATAAAACTGGAACTCTCACTCTGAATAAGCTTAGTGTTGATAGAAACTTGATTGAAGTGTTTGCCAAGGGAATTGAGAAGGAATATGTGATGCTTTTAGCAGCAAGAGCTTCTAGGACTGAAAATCAAGATGCTATAGATGCTGCAATAGTTGGAATGCTTGCTGATCCTAAAGAGGCAAGAGCTGGTATAAGGGAGGTGCATTTTCTACCATTCAATCCTGTAGACAAGAGGACTGCTCTTACATATATCGATTCCGATGGAAAATGGCATCGAGCGAGCAAAGGAGCTCCTGAGCAGATAATAAACCTGTGCAATTGCAAAGAAGATGTCAGGAAAAAAGTTCATGCAGTGATTGATAAGTTTGCGGAGCGTGGACTTCGATCTTTAGGTGTTGCAAGACAAGAGGTACCTGAGAGAACAAAAGATAGTCCTGGTGGACCATGGCAATTTGTCGGTCTGCTACCGTTGTTTGATCCTCCAAGGCATGATAGTGCTGAAACAATTAGAAGAGCACTTAACCTTGGTGTGAATGTTAAGATGATTACTGGGGATCAGCTTGCCATTGGAAAGGAAACTGGTAGAAGGCTTGGAATGGGAACAAACATGTATCCATCGTCTGCTTTGCTTGGTCAAGACAAAGATTCTTCTATTTCGGCTCTTCCAGTTGACGAGTTGATCGAGAAGGCTGATGGATTTGCAGGAGTATTTCCAGAGCACAAATACGAAATCGTCAAGAGGCTGCAAGAGAAGAAGCATATATGTGGAATGACAGGAGATGGTGTAAACGATGCTCCTGCGTTAAAGAAAGCCGATATCGGAATTGCAGTTGCTGATGCTACAGATGCTGCTAGAAGTGCTTCTGATATTGTCCTCACTGAACCCGGTCTTAGTGTCATTATTAGCGCTGTGCTCACCAGCCGAGCGATTTTTCAAAGGATGAAGAATTATACTATTTATGCTGTGTCAATCACCATCCGTATTGTGTTCGGTTTTATGTTTATTGCGTTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTTTTGATTATTGCCATTCTAAATGATGGTACCATTATGACAATATCAAAGGATAGAGTGAAACCATCTCCACTACCTGATAGTTGGAAACTGAGGGAGATATTTGCTACTGGTGTTGTCCTAGGAAGTTACATGGCACTAATGACAGTAGTATTTTTCTGGGCGATGAAAGATACCAACTTCTTTTCGAACAAGTTTGGTGTGAGGCCTATAAGACATAATCCTGATGAGATGATGGCGGCTTTATATCTACAAGTTAGTATAATAAGCCAAGCACTAATTTTTGTAACTAGATCACGCAGTTGGTCTTTCGCCGAAAGACCTGGTCTTCTCCTACTTGGTGCTTTTCTCATTGCTCAACTGATTGCAACATTTATAGCAGTGTATGCTAATTGGGGATTTGCAAGAATAAAGGGAATGGGATGGGGTTGGGCTGGTGTGATTTGGTTGTATAGCTTGGTAACTTATATCCCTCTTGATTTACTCAAATTCGCAATCCGCTATTTTCTAAGCGGGAAGGCTTGGGATAATCTTTTGGAAAATAAGACTGCCTTCACTACAAAGAAAGACTATGGAAAAGAAGAGAGGGAAGCACAATGGGCGGCTGCGCAGAGAACACTTCACGGTCTTCAGCCTCCGGAAGCCTCCAACGTTTTCAATGAAAAGAATAGCTATAGAGAACTTTCGGAGATTGCGGAGCAAGCCAAGAGACGTGCTGAAGTTGCAAGGCTTAGGGAGGTTCATACTCTCAAGGGACATGTAGAATCAGTGGTGAAGCTGAAGGGACTAGATATTGATACAATTCAGCAGCACTACACAGTTTAA	2856	0.4202	MGGISLEEIKNESVDLERIPIDEVFEQLKCSRQGLTSEEGANRLQVFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGSGRPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDSRWSEQDAAILVPGDIISIKLGDIVPADARLLEGDPLSIDQSALTGESLPVTKSSSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGILVELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGIEKEYVMLLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGKWHRASKGAPEQIINLCNCKEDVRKKVHAVIDKFAERGLRSLGVARQEVPERTKDSPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDSSISALPVDELIEKADGFAGVFPEHKYEIVKRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYMALMTVVFFWAMKDTNFFSNKFGVRPIRHNPDEMMAALYLQVSIISQALIFVTRSRSWSFAERPGLLLLGAFLIAQLIATFIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDLLKFAIRYFLSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPEASNVFNEKNSYRELSEIAEQAKRRAEVARLREVHTLKGHVESVVKLKGLDIDTIQQHYTV*	952

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g0136	951	PRINTS	H+-transporting ATPase (proton pump) signature	445	463	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Mtr1g0136	951	PRINTS	H+-transporting ATPase (proton pump) signature	560	576	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Mtr1g0136	951	PRINTS	H+-transporting ATPase (proton pump) signature	588	604	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Mtr1g0136	951	PRINTS	H+-transporting ATPase (proton pump) signature	619	644	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Mtr1g0136	951	PRINTS	H+-transporting ATPase (proton pump) signature	760	781	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Mtr1g0136	951	SUPERFAMILY	Calcium ATPase, transduction domain A	132	229	IPR008250	-
	Mtr1g0136	951	PANTHER	CALCIUM-TRANSPORTING ATPASE	1	931	-	-
	Mtr1g0136	951	Coils	Coil	902	922	-	-
	Mtr1g0136	951	CDD	P-type_ATPase_H	34	841	IPR006534	GO:0008553\|GO:0016021\|GO:0120029
	Mtr1g0136	951	PRINTS	P-type cation-transporting ATPase superfamily signature	179	193	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g0136	Mtr-Chr1	1526305	1534791	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g0136	4	951	Primary Pumps ATPases	AT2G07560	83.544	0.0	1627

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g0136	K01535		-	gmx:100791692	1760.73

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g0136	1	1526305	1534791	Mtr3g4001	3	53749259	53755718	PCT

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