Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0131 ATGGATGAACGTTCCAGCAAAAGAGGCATTAATGGTAATTCCAGAGATACTTCCAATACCAGAGATACCGCCAATACCAGAGATCGAAACGATCAAACTCGCAGACGAGCGGGTTGCAGTAGTACAGCCAACCCTCCTAAGGTTGCTCAAGTCAGATATGTTGAAAAAGGTAAATCGTTAAGGCCATCAGGACAGTCAGCTTCAAGTGGCAAGGAGGTAATTGGTAGTTCCCGTAGAACAGCTGCTAACCCAGCAAAACCACTTACAAAGCCTGAGAGAACATTAACTTCAAGCAGGCTTCAAGCTGAAAAGGAAGGGACAAAGTCTACTAAAGGGATTTTGATGGAAGTAGGAAAATCTAGCGGAGTATCAAATTTAAGATCTCAAAGGAATTTTAATCAAAGACCTGTATTGCGTCAACGAGAAAACGGAAGCATTGGTCCGGTGACACAAGCTGCTTCTAGCAAGTATGGATTGAGGAACCTCAGATGCAACACTGTATCTGATGTCATCCCTTCTTGCTCATCATCAGATTCTACCGTTAATACAAGGAAGACTACTTTGATAAAAAGGAGAAATTCTGAAGGGGAAAGTAGCTCCACTGGTAAAGGGAAGAAGATGACTGCGCCCTCATCGGAAGGATTGAATTTTGGCTCCAGAAAGGGCATATCTATATCTGATACAAGAGGATCTAGAAATATTCCTCCTCACAGGGACAATAGCAGAGCATCAGTTAGAACTGTAAGATCAGTTAGTGGTTATGCCAGGGGGAGATTTTCTAGTCAAGGAAACGAAAACCCCAGGGTGACCAATGAGTCCCCTGTCGTATCCCCTATTTCGCCTCATTCTATTGATCTTAATTCTCCTGTCACTGAGGAGTTATATGATATGATGCCTAATTCTCCTGAAGAATATGACATCCCACATTCTCTAATAATTCAGGATGGCTCTCGGCGCTACGATGTGGATGATATGTCAGAGGTATTATTGGCACTTGAGAGACTTGAACAAGATGAAGAGTTAACTCAAGAGCAAATTCATTTACTAGAGACCAACTTGTATCTTAGTGAACTTAACATCTATGATCGTCATAGAGACATGCGGTTGGATATTGACAGCATGTCATATGAGGAACTCTTAGCTCTCGAAGAGAGGATGGGTACCGTGAGCACCGCTCTGACAGAAGAAGCACTTTCAGATAGTCTTAAAAGAAGTATCTATCAGTCTGAGCCTTCAGATGATGCTGCTGACTATGTTAATGAGGAAAAGGATGATACCAAATGCTGCATTTGCCAGGAAGAATATGTTGATGGAGATGAAGTTGGAAGACTGCAATGCGTGCATAAATTTCATGTGCTTTGTATAGAGGACTGGTTGAGGCTGAAGAACTGGTGCCCTTTTTGTAAAGAGTCGGCATCACTGTCCAATTCATCTTCATCTCCTTAA 1446 0.4239 MDERSSKRGINGNSRDTSNTRDTANTRDRNDQTRRRAGCSSTANPPKVAQVRYVEKGKSLRPSGQSASSGKEVIGSSRRTAANPAKPLTKPERTLTSSRLQAEKEGTKSTKGILMEVGKSSGVSNLRSQRNFNQRPVLRQRENGSIGPVTQAASSKYGLRNLRCNTVSDVIPSCSSSDSTVNTRKTTLIKRRNSEGESSSTGKGKKMTAPSSEGLNFGSRKGISISDTRGSRNIPPHRDNSRASVRTVRSVSGYARGRFSSQGNENPRVTNESPVVSPISPHSIDLNSPVTEELYDMMPNSPEEYDIPHSLIIQDGSRRYDVDDMSEVLLALERLEQDEELTQEQIHLLETNLYLSELNIYDRHRDMRLDIDSMSYEELLALEERMGTVSTALTEEALSDSLKRSIYQSEPSDDAADYVNEEKDDTKCCICQEEYVDGDEVGRLQCVHKFHVLCIEDWLRLKNWCPFCKESASLSNSSSSP* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0131 481 MobiDBLite consensus disorder prediction 21 35 - -
Mtr1g0131 481 Pfam Ring finger domain 427 469 IPR001841 -
Mtr1g0131 481 Coils Coil 325 352 - -
Mtr1g0131 481 MobiDBLite consensus disorder prediction 61 76 - -
Mtr1g0131 481 SMART ring_2 428 468 IPR001841 -
Mtr1g0131 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 94 - -
Mtr1g0131 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 94 473 - -
Mtr1g0131 481 SUPERFAMILY RING/U-box 422 472 - -
Mtr1g0131 481 MobiDBLite consensus disorder prediction 200 286 - -
Mtr1g0131 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 94 473 IPR045191 GO:0061630
Mtr1g0131 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 94 IPR045191 GO:0061630
Mtr1g0131 481 ProSiteProfiles Zinc finger RING-type profile. 428 469 IPR001841 -
Mtr1g0131 481 MobiDBLite consensus disorder prediction 172 187 - -
Mtr1g0131 481 MobiDBLite consensus disorder prediction 1 108 - -
Mtr1g0131 481 MobiDBLite consensus disorder prediction 172 286 - -
Mtr1g0131 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 473 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0131 Mtr-Chr1 1462698 1467467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0131 312 472 C3H Transcription Factor Family AT2G15530 42.236 1.36e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0131 - - mtr:MTR_1g009680 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0131 1 1462698 1467467 Mtr3g4003 3 53765498 53769848 PCT