Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0125 ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCATGCCCGGTTCAGACGCGCCCCGGTTCACTCCTCTTCCTCATCAGCACCGGTTCAACCGGTTCAGATTCAATCAACACCTTCACCGGTTCAAACACCAACCGTATCTTTACCAAAACACTTTCCTTCTCCGTCACAGGCACCGGCGCCAATCTCCGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCACAATCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTTGTTTTGAGCTCAAACACGAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACCGGTGATGGAAGCGTTAACGGGAAACAAGGATCTTCGATTTTTCTCAATCCTGCGGCGACACCAGCTATCTCCGGTGGAAAGCCGCCTCTTTCGGCGGTGCCGTCTAAGAAAAGGTGTCATGATCATGGGGAACACTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGTGTTAAGAGAAGAAAAAATAGGGTGAAAAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACCGCCGATATACCACCGGACGAGTACTCATGGCGGAAATACGGTCAGAAACCGATCAAGGGTTCGCCATATCCACGAGGCTATTACAAGTGTAGCACAGTGAGAGGGTGCCCAGCAAGGAAACACGTGGAGCGTGCAACCGACGATCCAACGATGCTGATTGTAACGTATGAAGGAGAGCACAGACACACTATTCAAGCTGCGATGCAGGAGAACGCAGCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA 1023 0.4858 MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSAPVQPVQIQSTPSPVQTPTVSLPKHFPSPSQAPAPISVRHAPASFVQPQSHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATPAISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENAAGIVGLVFEST* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0125 340 Pfam Plant zinc cluster domain 215 259 IPR018872 -
Mtr1g0125 340 Pfam WRKY DNA -binding domain 263 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0125 340 MobiDBLite consensus disorder prediction 204 233 - -
Mtr1g0125 340 SMART WRKY_cls 261 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0125 340 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 338 IPR044810 GO:0003700
Mtr1g0125 340 PANTHER WRKY PROTEIN 12 338 - -
Mtr1g0125 340 MobiDBLite consensus disorder prediction 73 110 - -
Mtr1g0125 340 Gene3D WRKY domain 244 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g0125 340 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr1g0125 340 SUPERFAMILY WRKY DNA-binding domain 257 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr1g0125 340 MobiDBLite consensus disorder prediction 73 106 - -
Mtr1g0125 340 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0125 Mtr-Chr1 1392650 1394920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0125 1 339 WRKY Transcription Factor Family AT2G24570 59.599 2.28e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr1g0125 WRKY 7.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0125 - - cam:101509842 535.798