Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0122 ATGTCTCGTGTGTACGTGGGTAATCTGGATTCCAGAGTGTCAGAGAGGGACCTTGAGGATGAATTTCGTGTTTTTGGTGTAATTCGAAGTGTTTGGGTTGCTCGAAGACCACCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATACGCGATCTAGATGGCAAGAATGGATGGAGGGTGGAGCTTTCTCACAATTCTAGAAGTGGTGGTGGTGGCGGCGGCGGCGGTGGAGGTCGTGGCCGCGGAGGTGGTGGTGGCGGTGGTTCTGATTTGAAGTGTTACGAGTGCGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGTGCAGGAAGACGCCGTAGCCGCAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCGCCGCAGTGTGTCACCTCGTGGGCGTAGCTACAGCAGGTCACCGCCTCCTTACCGTGGGCGTGAGGAGGTGCCATATGCTAATGGAAATGGCGTTAGGGACCGACGCCGAAGCAGAAGTTAA 573 0.5532 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRDLDGKNGWRVELSHNSRSGGGGGGGGGGRGRGGGGGGGSDLKCYECGEPGHFARECRNRGGGGAGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGVRDRRRSRS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0122 190 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Mtr1g0122 190 Gene3D - 1 97 IPR012677 -
Mtr1g0122 190 SUPERFAMILY Retrovirus zinc finger-like domains 80 119 IPR036875 GO:0003676|GO:0008270
Mtr1g0122 190 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 182 - -
Mtr1g0122 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mtr1g0122 190 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
Mtr1g0122 190 Gene3D - 98 155 - -
Mtr1g0122 190 SMART rrm1_1 3 69 IPR000504 GO:0003723
Mtr1g0122 190 ProSiteProfiles Zinc finger CCHC-type profile. 98 114 IPR001878 GO:0003676|GO:0008270
Mtr1g0122 190 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 182 - -
Mtr1g0122 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Mtr1g0122 190 MobiDBLite consensus disorder prediction 66 190 - -
Mtr1g0122 190 CDD RRM_SRSF3_like 3 71 - -
Mtr1g0122 190 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0122 Mtr-Chr1 1350626 1354801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0122 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 2.42e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0122 K12896 - sspl:121745482 209.149