Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0105 ATGGAACATGATAAAGATTTGAATCGTGCATCAAGTTCTTCAGAACAAGAAAGCAATCCCGTTCTTGGAACTCAAAGGCCTGCCTCTATTCAACAACGAAGAGTGACTGGTCCTACAAGAAGATCAACTAAAGGAGGTTGGACAGAGAAGGAGGATAAACTTTTGATTGATGCTGTAAAAAAGTATAATGGAAAAAGTTGGAAAAAGATAGCTGCATGTGTTACTGGCAGAACAGATGTTCAATGTCTGCATCGTTGGCAAAAGGTTTTGAATCCTGATCTTATCAAAGGACCTTGGTCAGAACAGGAAGATAATCAACTAAGTGAGCTTGTTAAGATAAATGGGAAAAAAAATTGGTCTCAGGTAGCAAAGTCCTTACCAGGTCGCATAGGTAAACAATGTAGAGAAAGGATTGGTTTTGCCATCCAAAAAGGTCTAACGGCACAGCTTGTTGCCCGCTTGGCTTCTATTCAAGTGTAA 480 0.3979 MEHDKDLNRASSSSEQESNPVLGTQRPASIQQRRVTGPTRRSTKGGWTEKEDKLLIDAVKKYNGKSWKKIAACVTGRTDVQCLHRWQKVLNPDLIKGPWSEQEDNQLSELVKINGKKNWSQVAKSLPGRIGKQCRERIGFAIQKGLTAQLVARLASIQV* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0105 159 MobiDBLite consensus disorder prediction 12 43 - -
Mtr1g0105 159 Gene3D - 43 93 - -
Mtr1g0105 159 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 146 IPR017930 -
Mtr1g0105 159 CDD SANT 98 137 IPR001005 -
Mtr1g0105 159 MobiDBLite consensus disorder prediction 1 48 - -
Mtr1g0105 159 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 94 IPR017930 -
Mtr1g0105 159 PANTHER TRANSCRIPTION REPRESSOR MYB5 34 137 - -
Mtr1g0105 159 SUPERFAMILY Homeodomain-like 22 89 IPR009057 -
Mtr1g0105 159 CDD SANT 47 90 IPR001005 -
Mtr1g0105 159 PANTHER MYB PROTEIN-RELATED 34 137 - -
Mtr1g0105 159 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Mtr1g0105 159 Pfam Myb-like DNA-binding domain 96 137 IPR001005 -
Mtr1g0105 159 ProSiteProfiles Myb-like domain profile. 39 90 IPR001005 -
Mtr1g0105 159 SMART sant 43 92 IPR001005 -
Mtr1g0105 159 SMART sant 95 144 IPR001005 -
Mtr1g0105 159 SUPERFAMILY Homeodomain-like 74 138 IPR009057 -
Mtr1g0105 159 ProSiteProfiles Myb-like domain profile. 91 137 IPR001005 -
Mtr1g0105 159 Gene3D - 95 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0105 Mtr-Chr1 1141340 1144100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0105 31 146 MYB Transcription Factor Family AT4G32730 59.483 2.57e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g0105 Myb_DNA-binding 8.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0105 - - fve:101303074 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0105 1 1141340 1144100 Mtr3g4056 3 54295723 54301930 PCT