Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0103 ATGCAAAAGGACAAAGAAGTTGTTAGTAAAGAAAGGAAGGATATGGAAATGGAAGGAAATCGTGAGAAAGAGGAAACCCTACCTCCTGGATTTCGATTTCATCCTACCGATGAAGAACTCATCACTTACTATCTTGTAAACAAGATTTCAGATTCTGTAAATTTTACATGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCAGGGAAGGCCAAGATGGGTACAAAAGAATGGTACTTCTTCAGTCTAAGAGATCGTAAATATCCAACAGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAACAGTGTTACATCAGAATTAGTTGGTATGAAGAAGACTTTGGTTTTTTACAAAGGTCGGGCTCCTAGAGGAGAGAAAACCAACTGGGTTATGCATGAATACCGTATCCATTCCAAATCCAGTATTAGAACCAACAAGCAGGATGAATGGGTGGTAAGCAGAGTATTCCGCAAGAGTGCAGGTGCAAAGAAGTACCCTTCTTCTTCTTCAAATCTTACAAGAGCAGTCATGAACCCTTACAATATTAATCTAGAAGTTGGTCCTCCTAGCTTTAACAATAATATGACACCACCAACAATGATGCAGCATTTAGGGCTAGATTCTGCTACTCATTTCCAGCTCTATGGAAGGAACTACATCAACACTGGAGAAGTTCTAAGAGCTGGTGTACCAATGCATCAATATGGATCCCATTTATCATCATCACCCTTAGGAGGAGAAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGTTCCACATCATCACAAACTATTTTGAGGCCAATGCCATCAACTACTCATACTATGGCTGCTGATTTCAACTCCAACATGATGACAGGTGCAAATAGTAATACCCTTGTTGCTGCAGAGAATAATAATAACTTAGGGTTTGGTGGTGGAGATCAAGTGAATAATGCAAACCCTAATCATGGCAATAGGTACAATATGCAGGGTACTATGGACCATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTACTGA 1089 0.4022 MQKDKEVVSKERKDMEMEGNREKEETLPPGFRFHPTDEELITYYLVNKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSSNLTRAVMNPYNINLEVGPPSFNNNMTPPTMMQHLGLDSATHFQLYGRNYINTGEVLRAGVPMHQYGSHLSSSPLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFNSNMMTGANSNTLVAAENNNNLGFGGGDQVNNANPNHGNRYNMQGTMDHCVDLDHYWPPSY* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0103 362 ProSiteProfiles NAC domain profile. 27 177 IPR003441 GO:0003677|GO:0006355
Mtr1g0103 362 MobiDBLite consensus disorder prediction 1 31 - -
Mtr1g0103 362 Gene3D NAC domain 36 181 IPR036093 GO:0003677|GO:0006355
Mtr1g0103 362 SUPERFAMILY NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
Mtr1g0103 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 358 - -
Mtr1g0103 362 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 11 358 - -
Mtr1g0103 362 Pfam No apical meristem (NAM) protein 28 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0103 Mtr-Chr1 1087497 1090784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0103 18 359 NAC Transcription Factor Family AT2G24430 51.420 2.91e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr1g0103 NAM 6.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0103 - - gmx:100811175 451.055