Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0078 ATGATAATTAAGAAGAATCTCAAATCTGAAATGCCGAATCGCAAACGGAGAAGATTAACGGAAAACGACGAGTTGACTCAGAGAAAGAAGAAACTTAACGGAAATAATTTTCCGTTAAATCTTCTCAACGGTGCAATTCCCGTTAGTTTTACTGGTTTACTCGGTGCCACCGTTGCGACAGTGGCACCGGGTAATGATAATAGCTGCTTTTCCGTTGTCTCTGATGATGACGGAAAAGGAGATATTATTAAAACTGCAACGGCAACTGCTACGCGGCCGCCGTTGGTTAGAACCTCACGCGGCCGTCTTCAAGTTATGCCCTCGCGGTTTAATGATTCAGTTATTGTCAATTGGAGGAAAGATGGTAAAAACAACGCGGCAGCGACGTCTGCAGGCGCGGCTGCCACGAGCTTTCGTGAATTTGAATTTGACAAATTTGAAGATTTTAGTCTTAAGAAATGCAATGGGAAGGGGAAGAATGGAACCGGCAGAGGGCGAGGGTATTCGGAATTGTGTGAGGAGGTGTTGCATAAGAATTTTGGTGTTGCTGCTACTAGTAAGGAATTGAGTTTGCGTGAGATTGCTGAGGAAACAAAGATGAACAATGGAGTTTTGAAGAAGAAAGAAGGGTTTTTTGGACCAGAAGATTTTGTGGCTGGTGATATAGTTTGGGCTAAGGCTAGGAAAAAGGAACCATTTTGGCCTGCAATTGTGATTGATGCAATGAGTCAAGCACCTGAGCTGGTTTTGAGATCATGTATAGCTGATGCTACTTGTGTCATGTTTCTTGGCTACTCTAGGAATGATGATCACAGGGATTTTGCATGGGTGAAGTATGGGATGATTTTTCCATTTGTGGAGAATGTAGACAGGTTTCAAGAGCAGTCTGAGTTGAGTTACTGTGATCCGTCTCAATTTCAAGCGGCAGTTGAGGAGGCGTTTTTGGCGGATCAGGGGTTTGTAGAGAAGTTAACAGAAGATATAAATGCGGTGGCTGGTAATAATGGTTGCAGTGATGATTCTATTATTAAAAGCTTTCAGAAAGTCACTGCTTCAAACCAGAAGAAGGATTTATTTGACAGAAAGAAAAACGTAGGACTTTGTGACGAATGTGGATTGGACCTTCCTTTCAATATGTCAAAGAAAACAAAGGATTTGACTCCTGGTGGTCAACTCCTATGTAAAACATGTGCAAGGTTGATGAAATCGAAACATTATTGCGGCATATGTAAGAAAGTTTGGAATCAATCGGATAGCGGAAGTTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGCGACAAAATCTCCAGCATCCTTTTTAAGAATCTTGGAAGCACTGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCTGATTCAGAAAAATCACATCCAAAAATCAAATGGAGCAAATACAATGGGAAGGTAGTGCTTCCAAAGAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCATGTCTTCACTTAGTTATGTGCAAGTGTGATTTTTGTGGGACTGAAAAACAGGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAACTGGAAAACAAGTATTCAGGTTAAAGGATCCATGATATCGCTGGAACAATGGATGCTACAGTTGGCTGATTTTCATGCTAAAGTTGCGGTTTCTTCTGTCAAACCTAAAAGACCATCCTCAAAAGAAAGAAAACATAAATTGCTTACCTTTCTGCAAGACAAGTACGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGTGTCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACACGAGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCTACTGATATCCATCCGTTATGGGTTCATGTCACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCCAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTAAGTATACCATCAAATTCTTTCGTGAAGATTTGTGTTATTTGTAAGCAAATCCATGGCTCGTGCACACAATGTGTCAAGTGTTCCACTTATTTCCATGTTATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATAGTTCGGAAAAAAATGGTAAACAGACAACAAGAATGGTTTGTTACTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATACAAACCCCTCATGGGGTCATTTCAACTAAAATCCTTATCCAAAATAAGAGAAAAGTTGGGTCAAGATTAATTTCGTCAAACAGAATAAAGGTAGAAGACACTCCTCCAGAAGATAACACCGAACATGACCCATTTTCTGCTGCTAGGTGCCGAGTCTTTGTAAGAACAAACCACACAAAAAAGAGAGCAGCAGATGAAGCCATTCCTCATAAAGTGAGGGGTCACTACCATCATCCTTTAGATGCTATACAGAGATTAAATTCATCCAAAGTGGTAGATGAGTCTCAGACATTTTCATCTTTTAGGGAACGCCTTCATCACTTACAGAGAACCGAAAACGAACGAGTGTGCTTCGGTAGATCAGGCATACATGGATGGGGCCTATTTGCACGAAGAACTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGTGAACAAGTAAGGCGCAGCGTTGCCGATCTAAGGGAGGCGCGGTATAAATTAGAAAGGAAAGACTGCTATCTGTTCAAAATTAGTGAAGAGGTGGTAGTTGATGCAACTGATAAAGGAAATATTGCACGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTCATGACGAGAGCCGGATCGCCCTCATTGCCAAGACTAACGTATCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCGGATGAGCCAGATGAATTCAAAGTCCCTTGCTTATGTAAAGCTCCAAACTGCAGAAAATTCATGAATTAG 3105 0.4145 MIIKKNLKSEMPNRKRRRLTENDELTQRKKKLNGNNFPLNLLNGAIPVSFTGLLGATVATVAPGNDNSCFSVVSDDDGKGDIIKTATATATRPPLVRTSRGRLQVMPSRFNDSVIVNWRKDGKNNAAATSAGAAATSFREFEFDKFEDFSLKKCNGKGKNGTGRGRGYSELCEEVLHKNFGVAATSKELSLREIAEETKMNNGVLKKKEGFFGPEDFVAGDIVWAKARKKEPFWPAIVIDAMSQAPELVLRSCIADATCVMFLGYSRNDDHRDFAWVKYGMIFPFVENVDRFQEQSELSYCDPSQFQAAVEEAFLADQGFVEKLTEDINAVAGNNGCSDDSIIKSFQKVTASNQKKDLFDRKKNVGLCDECGLDLPFNMSKKTKDLTPGGQLLCKTCARLMKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSHPKIKWSKYNGKVVLPKKVTVLCNGVEGIYFPCLHLVMCKCDFCGTEKQALSEWERHTGSKFRNWKTSIQVKGSMISLEQWMLQLADFHAKVAVSSVKPKRPSSKERKHKLLTFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARNVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDIHPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCVKCSTYFHVMCASRAGYRMELHSSEKNGKQTTRMVCYCAYHRAPNPDTVLIIQTPHGVISTKILIQNKRKVGSRLISSNRIKVEDTPPEDNTEHDPFSAARCRVFVRTNHTKKRAADEAIPHKVRGHYHHPLDAIQRLNSSKVVDESQTFSSFRERLHHLQRTENERVCFGRSGIHGWGLFARRTIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0078 1034 ProSitePatterns Zinc finger PHD-type signature. 602 647 IPR019786 -
Mtr1g0078 1034 PANTHER PHD FINGER PROTEINS 1 1034 - -
Mtr1g0078 1034 ProSiteProfiles Post-SET domain profile. 1018 1034 IPR003616 -
Mtr1g0078 1034 SMART set_7 892 1015 IPR001214 GO:0005515
Mtr1g0078 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 769 IPR013083 -
Mtr1g0078 1034 SUPERFAMILY SET domain 886 1031 IPR046341 -
Mtr1g0078 1034 SUPERFAMILY FYVE/PHD zinc finger 600 664 IPR011011 -
Mtr1g0078 1034 Pfam PHD-finger 614 648 - -
Mtr1g0078 1034 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g0078 1034 Pfam SET domain 903 1008 IPR001214 GO:0005515
Mtr1g0078 1034 ProSiteProfiles SET domain profile. 892 1009 IPR001214 GO:0005515
Mtr1g0078 1034 ProSiteProfiles Extended PHD (ePHD) domain profile. 653 768 IPR034732 -
Mtr1g0078 1034 CDD PHD_ATX3_4_5_like 601 647 IPR042011 -
Mtr1g0078 1034 Gene3D SET domain 805 1034 IPR046341 -
Mtr1g0078 1034 CDD PHD_TCF19_like 407 457 - -
Mtr1g0078 1034 SUPERFAMILY Tudor/PWWP/MBT 211 317 - -
Mtr1g0078 1034 Pfam PHD-finger 406 459 IPR019787 -
Mtr1g0078 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 650 IPR013083 -
Mtr1g0078 1034 ProSiteProfiles Zinc finger PHD-type profile. 404 460 IPR019787 -
Mtr1g0078 1034 Pfam PWWP domain 220 313 IPR000313 -
Mtr1g0078 1034 ProSiteProfiles Zinc finger PHD-type profile. 599 650 IPR019787 -
Mtr1g0078 1034 Gene3D - 214 319 - -
Mtr1g0078 1034 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1034 IPR025780 -
Mtr1g0078 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 461 IPR013083 -
Mtr1g0078 1034 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1034 - -
Mtr1g0078 1034 CDD SET_SETD1-like 879 1030 - -
Mtr1g0078 1034 SUPERFAMILY FYVE/PHD zinc finger 403 462 IPR011011 -
Mtr1g0078 1034 Pfam PHD-zinc-finger like domain 655 767 - -
Mtr1g0078 1034 ProSiteProfiles PWWP domain profile. 219 288 IPR000313 -
Mtr1g0078 1034 SMART PHD_3 712 768 IPR001965 -
Mtr1g0078 1034 SMART PHD_3 406 458 IPR001965 -
Mtr1g0078 1034 SMART PHD_3 601 648 IPR001965 -
Mtr1g0078 1034 SMART PostSET_3 1018 1034 IPR003616 -
Mtr1g0078 1034 Coils Coil 1033 1034 - -
Mtr1g0078 1034 CDD ePHD_ATX3_4_5_like 656 767 IPR041955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0078 Mtr-Chr1 849332 860003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0078 602 754 C2H2 Transcription Factor Family AT3G14740 34.783 3.03e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr1g0078 zf-HC5HC2H_2 1.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0078 - - gmx:100811337 1513.43