Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0072 ATGGACTTTGATAGACTTGGACCGTCTGATCCTGGTGGCTCCTCCCGTCGATCCACCGCACCTCTAACACCCTCCACCACATCAAATTCCTCTCCTAAAAGCAATAAGAAGCTCATCATGCTGTCCATCCTCGCCGCCGTCTTGATCATCGCTTCCGCCATCTCGGCTGCACTGATCACCGTGGTCCGGTCTCGTGCTTCATCCAACAATTCAAACCTTCTCCATTCCAAACCAACTCAAGCAATCTCCCGAACCTGCAGCAAAACTAGATACCCTTCACTTTGTATAAACTCTCTCTTAGATTTCCCTGGCTCAACCTCAGCTTCTGAGCAAGAACTAGTTCATATCTCATTCAATATGACACACCGTCACATCAGCAAAGCACTCTTCGCCTCCTCAGGTCTCTCATATACAGTCGCGAACCCACGAGTTCGTGCTGCATACGAGGATTGTCTTGAACTAATGGACTCTCTCATGACCACGTCCTCAACTTTATCCAACGACGACGGTGAATCAAGACAATTCTCCAATGTCGCTGGATCAACTGAGGACGTGATGACTTGGCTCAGTGCCGCGTTAACAAACCAAGACACATGTCTAGAAGGCTTTGAAGACACAAGCGGTACCGTTAAGGATCAGATGGTTGGTAACTTAAAAGACTTGTCGGAACTCGTGAGTAATTCCCTCGCGATATTTTCCGCGAGTGGAGATAATGATTTTACTGGTGTGCCGATACAGAACAAGAGAAGATTAATGGGAATGAGTGATATCTCGCGAGAATTTCCAAAATGGCTTGAGAAACGAGATAGGAGATTATTGAGTTTACCGGTATCGGAGATACAAGCCGATATTATCGTTTCAAAGAGTGGTGGTAACGGTACGGTGAAGACAATCACTGAAGCTATTAAGAAAGCACCGGAGCATAGTCGCCGTAGATTTATAATTTACGTGAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGGTGGGAAAGAAGAAAACTAATATTATGTTTATAGGAGATGGGAGGGGCAAAACTGTCATCACAGGAAAAAGAAGTGTTGGAGATGGCATGACCACTTTCCACACCGCTTCCTTTGCTGCTAGTGGTCCTGGGTTCATGGCACGTGACATTACATTCGAGAACTACGCCGGACCGGAGAAGCACCAAGCGGTGGCCCTCCGTGTCGGATCCGATCACGCGGTGGTGTACCGCTGCAACATTGTTGGTTACCAAGACGCATGCTATGTACATTCCAACCGTCAATTTTTCCGTGAATGCAACATTTATGGCACGGTAGATTTTATATTTGGAAATGCTGCAGTAGTTTTTCAAAAATGTAACATTTATGCACGTAAGCCTATGGCCCAACAAAAGAACACTATCACAGCTCAAAATAGAAAAGACCCGAATCAAAATACGGGTATATCCATTCATGATTGTCGGATCCTACCTGCCCCGGATCTAGCCTCATCAAAGGGCAGCATTGAAACATATTTGGGTCGTCCATGGAAAATGTATTCTAGGACTGTATATATGTTGTCCTATATGGGTGATCATGTGCATCCACATGGATGGTTGGAATGGAATGGTGACTTTGCTTTAAAAACTTTGTATTATGGTGAGTACATGAATTTTGGACCGGGCGCGGCTATCGGACAACGGGTCAAATGGCCCGGGTATCGGGTCATTACTTCAACTCTGGAGGCCAATAGATATACCGTGGCCCAATTCATCTCTGGTTCTTCGTGGTTACCGTCCACCGGAGTGGCATTTTTGGCCGGCTTGTCCACTTGA 1797 0.4597 MDFDRLGPSDPGGSSRRSTAPLTPSTTSNSSPKSNKKLIMLSILAAVLIIASAISAALITVVRSRASSNNSNLLHSKPTQAISRTCSKTRYPSLCINSLLDFPGSTSASEQELVHISFNMTHRHISKALFASSGLSYTVANPRVRAAYEDCLELMDSLMTTSSTLSNDDGESRQFSNVAGSTEDVMTWLSAALTNQDTCLEGFEDTSGTVKDQMVGNLKDLSELVSNSLAIFSASGDNDFTGVPIQNKRRLMGMSDISREFPKWLEKRDRRLLSLPVSEIQADIIVSKSGGNGTVKTITEAIKKAPEHSRRRFIIYVRAGRYEENNLKVGKKKTNIMFIGDGRGKTVITGKRSVGDGMTTFHTASFAASGPGFMARDITFENYAGPEKHQAVALRVGSDHAVVYRCNIVGYQDACYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLASSKGSIETYLGRPWKMYSRTVYMLSYMGDHVHPHGWLEWNGDFALKTLYYGEYMNFGPGAAIGQRVKWPGYRVITSTLEANRYTVAQFISGSSWLPSTGVAFLAGLST* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0072 598 MobiDBLite consensus disorder prediction 12 33 - -
Mtr1g0072 598 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 234 IPR035513 -
Mtr1g0072 598 PANTHER PECTINESTERASE 23 596 - -
Mtr1g0072 598 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 232 IPR006501 GO:0004857
Mtr1g0072 598 Gene3D - 277 596 IPR012334 -
Mtr1g0072 598 MobiDBLite consensus disorder prediction 1 33 - -
Mtr1g0072 598 PANTHER PECTINESTERASE 23 596 - -
Mtr1g0072 598 ProSitePatterns Pectinesterase signature 2. 429 438 IPR033131 -
Mtr1g0072 598 SUPERFAMILY Pectin lyase-like 280 595 IPR011050 -
Mtr1g0072 598 SMART PMEI_2 77 231 IPR006501 GO:0004857
Mtr1g0072 598 CDD PMEI-like_3 86 234 - -
Mtr1g0072 598 Pfam Pectinesterase 283 581 IPR000070 GO:0030599|GO:0042545
Mtr1g0072 598 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 233 IPR035513 -
Mtr1g0072 598 Pfam Plant invertase/pectin methylesterase inhibitor 81 231 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0072 Mtr-Chr1 780349 784263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0072 1 597 Carbohydrate Esterase AT5G53370 63.306 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0072 - - gmx:106796002 884.404