LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g0065	ATGGGAAGAAAAGGAGGAAGTTGGTTCTCTTCTGTCAAGAAAGTTTTCAAGTCTTCTTCATCTTCTAAGGACACGTCAGTGCCGGTCTCCACGCCGGTGCAGCCGGAGAAAAAGAAGGAAAACAAAGAGAAATTGGAGCATGAAGTGGCAGAGGAGGTATCCTTTGAGCATTTTCCAGCAGAGAGTTCACCTGATGATGTGACAAATGAGGGGAGTACAACATCAACACCAGTTAGAGATGATAGAAATCATGCCATTGCAGTTGCAGAAGCCACTGCAGCAGCAGCTTCAGCTGCTGTGGTAGCTGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCTGGTTATGGACGCCATAACAAGGAAGAAAGAGCAGCAACATTCATTCAATCACACTATAGAGGATACCTAGCTCGACGTGCATTACGCGCATTGAAAGGGTTAGTGAGGCTGCAAGCGTTGGTGCGGGGGCACAATGTGCGCAAGCAAGCTCAGATGACAATGCGGTGTATGCAAGCATTAGTGCGGGTGCAGGCGCGAGTGAGAGCACGCCGAGTTCAATTGAGTCATGAATGTCTCGAGAAAGCAATGGAGGAAGATGAAGAAGAAGAATTTGTGAGGCAACATGAGACTATTACTAAGCCTATGAGTCCCATGAGGAGGTCATCAGTCAGTAGTAACAATAATAATGGTTGGGATAACAAGTGTCAAAGTGTAAAAAAAGCTAAAGAAAATGATTTGAGAAAACATGAAGCTGCAATGAAGAGGGAGAGAGCTCTTGCATATGCTTTCAATTATCAACAGCAACAACAAAAGCAGCATTTACATAGAAACTCAAATGGTGATGATGTTGATATGGGAACCTACCATCCCAATGATGATGAAAAAGTCCAATGGGGTTGGAACTGGTTAGAACGTTGGATGTCATCACAACCCTACAATGTAAGACACATGGTCCCACGTGAGAGCTCTTATATGACACTTCCTTCAACAACATCAACAACAACAGATAACATGTCTGAAAAAACAGTAGAAATGGACATCATGGCAACACCAAGCAGAGGCAACTTCAATATGGGCCCCATGGGCTTGATGGCCCAAGAGTTTCATGATTCAAGTCCAACTTTCAATCGGCAGCATCAACGACCACCAAGCCCAGGTAGGCCAAGCTACATGGCCCCAACTCAATCCGCAAAGGCTAAGGTTAGGGCTGAAGGCCCGTTTAAGCAGAGGGCTCCATATGGACCTAACTGGAACTCATCGATAAAGGGAGGATCAATTATTGGATCGGGGTGTGACTCGTCTAGCTCGGGTGGTGGAACGTCTGCTTACAAGTTTCCGAGAAGCCCAGGCCCGAAAGTTAATGGTGTTCGTTCGGAGTCTAGAAGGACTGTGGGTGGTAGTCAAGACTATACCGAGGATTGGGCCGTTCCACTTGGAGCCCATGGTTGGGCTTAA	1455	0.4646	MGRKGGSWFSSVKKVFKSSSSSKDTSVPVSTPVQPEKKKENKEKLEHEVAEEVSFEHFPAESSPDDVTNEGSTTSTPVRDDRNHAIAVAEATAAAASAAVVAAQAAARVVRLAGYGRHNKEERAATFIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRVQLSHECLEKAMEEDEEEEFVRQHETITKPMSPMRRSSVSSNNNNGWDNKCQSVKKAKENDLRKHEAAMKRERALAYAFNYQQQQQKQHLHRNSNGDDVDMGTYHPNDDEKVQWGWNWLERWMSSQPYNVRHMVPRESSYMTLPSTTSTTTDNMSEKTVEMDIMATPSRGNFNMGPMGLMAQEFHDSSPTFNRQHQRPPSPGRPSYMAPTQSAKAKVRAEGPFKQRAPYGPNWNSSIKGGSIIGSGCDSSSSGGGTSAYKFPRSPGPKVNGVRSESRRTVGGSQDYTEDWAVPLGAHGWA*	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g0065	484	MobiDBLite	consensus disorder prediction	371	469	-	-
	Mtr1g0065	484	MobiDBLite	consensus disorder prediction	16	32	-	-
	Mtr1g0065	484	Coils	Coil	182	202	-	-
	Mtr1g0065	484	Coils	Coil	239	259	-	-
	Mtr1g0065	484	Pfam	IQ calmodulin-binding motif	148	163	IPR000048	GO:0005515
	Mtr1g0065	484	Pfam	IQ calmodulin-binding motif	122	142	IPR000048	GO:0005515
	Mtr1g0065	484	MobiDBLite	consensus disorder prediction	16	82	-	-
	Mtr1g0065	484	MobiDBLite	consensus disorder prediction	65	80	-	-
	Mtr1g0065	484	ProSiteProfiles	IQ motif profile.	145	172	IPR000048	GO:0005515
	Mtr1g0065	484	PANTHER	IQ-DOMAIN 5-RELATED	1	460	-	-
	Mtr1g0065	484	MobiDBLite	consensus disorder prediction	215	234	-	-
	Mtr1g0065	484	ProSiteProfiles	IQ motif profile.	121	149	IPR000048	GO:0005515
	Mtr1g0065	484	MobiDBLite	consensus disorder prediction	413	442	-	-
	Mtr1g0065	484	MobiDBLite	consensus disorder prediction	35	59	-	-
	Mtr1g0065	484	SMART	iq_5	143	164	IPR000048	GO:0005515
	Mtr1g0065	484	SMART	iq_5	120	142	IPR000048	GO:0005515
	Mtr1g0065	484	Gene3D	-	118	170	-	-
	Mtr1g0065	484	Pfam	Protein of unknown function (DUF4005)	377	419	IPR025064	-
	Mtr1g0065	484	PANTHER	IQ-DOMAIN 21	1	460	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g0065	Mtr-Chr1	659207	663652	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g0065	1	483	IQD Protein Family	AT3G49260	48.069	2.89e-98	302

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g0065	-		-	gmx:100798026	488.804